Jochen Behrends
Research Center Borstel, Leibniz Lung Center
Germany
EMBO Practical Course
This course includes a robust theoretical part on the fundamentals of cell sorting delivered by world-leading experts and practical sessions on using standard cuvette sorters. In addition, the course program will include principles, applications, and hands-on sessions on Image Cell Sorting (ICS), allowing attendees to get in touch with this exciting technology!
The course is intended for Ph.D. students and postdocs who are starting to use or already using cell sorting in their research projects. Applicants with previous active knowledge of basic principles of flow cytometry and regular use of flow cytometers in daily research will profit most from the course content.
The topics that will be covered include; instrument set-up and validation, correct operation to avoid technical insufficiency, sample quality, the essentials of gating, performing single-cell sorts for sequencing, and sorting based on morphological traits.
The principle objectives are to deliver the theory of cell sorting and the practical sides of this high-end technology.
“I am amazed by how inspirational and educational this practical course was. People from all over the world joined and together we had a great week learning more about a topic all of us are passionate about!” – Alexandra Vujkovic, Institute of Tropical Medicine, Belgium
“Even though the samples I work with are very different from what was demonstrated in the practical, I left with many useful techniques not easily found in literature, if at all. The environment was very lively, and the trainers were very eager to answer our questions and feed our curiosity.” – G.Y. Grace Ho, Max Planck Institute for Marine Microbiology, Germany
“This course tought me not only the basics of cell sorting, but also a plethora of factors and caveats influencing the outcome of my experiments. I feel prepared and confident!” – Tomasz Kaszubowski, Universitätsklinikum Erlangen, Germany
Please see EMBL’s COVID-19 safety recommendations for testing and other requirements to attend this on-site course.
Research Center Borstel, Leibniz Lung Center
Germany
Cytometry
UK
Novo Nordisk Foundation Center for Stem Cell Medicine – reNEW
Denmark
BD
Germany
University of Zurich
Switzerland
German Cancer Research Center (DKFZ)
Germany
EMBL Heidelberg
Germany
Babraham Institute
UK
BIH at Charité – Universitätsmedizin Berlin
Germany
Institut Pasteur
France
EMBL Heidelberg
Germany
EMBL Heidelberg
Germany
EMBL Heidelberg
Germany
German Cancer Research Center (DKFZ)
Germany
EMBL Heidelberg
Germany
EMBL Heidelberg
Germany
Novo Nordisk Foundation Center for Stem Cell Medicine – reNEW
Denmark
EMBL Heidelberg
Germany
German Cancer Research Center (DKFZ)
Germany
Course and Conference Team Lead
EMBL Heidelberg
Germany
Scientific Training Officer
EMBL Heidelberg
Germany
Are you on social media? Post using #EMBOCellSort and don’t forget to tag @EMBLEvents.
Please note the below programme is still subject to changes
Time (Europe/Berlin) | Speaker | Location |
---|---|---|
08:40 – 08:55 | Bus from hotel to EMBL ATC Entrance | ISG Hotel |
09:00 – 09:30 | Welcome and house notes and course overview Beata Ramasz – EMBL Heidelberg, Germany | Flex Lab A & B |
09:30 – 10:30 | Ice-breaker activity All participants and speakers/trainers | Flex Lab A & B |
10:30 – 11:00 | Coffee Break | Flex Lab A & B |
11:00 – 12:30 | Flash talks All participants and speakers/trainers | Flex Lab A & B |
12:30 – 13:30 | Lunch | EMBL Canteen |
13:30 – 14:15 | Lecture: Fluidics, Optics and Signal Generation Gelo dela Cruz – Novo Nordisk Foundation Center for Stem Cell Medicine – reNEW, Denmark | Flex Lab A & B |
14:15 – 15:00 | Lecture: Streams, Nozzles, Deflections and Drops Daniel Gimenes – EMBL Heidelberg, Germany | Flex Lab A & B |
15:00 – 16:30 | Discussion session: share topics of interest, open questions All participants and speakers/trainers | Training Lab A & B |
16:30 – 17:00 | Coffee Break | Flex Lab A & B |
17:00 – 17:45 | Lecture: The essentials of gating, the impact of sample quality Beata Ramasz – EMBL Heidelberg, Germany | Flex Lab A & B |
17:45 – 18:30 | Lecture: Considering downstream applications into your sorting Jochen Behrends – Research Center Borstel, Leibniz Lung Center, Germany | Flex Lab A & B |
18:30 – 20:00 | Dinner | ATC Rooftop Lounge |
20:00 | Departure to Hotel | ATC Entrance |
Time (Europe/Berlin) | Speaker | Location |
---|---|---|
08:40 – 08:55 | Bus from hotel to EMBL ATC Entrance | ISG Hotel |
09:00 – 09:10 | Overview of the day | Flex Lab A & B |
09:10 – 09:55 | Lecture: Biosafety Considerations Steffen Schmitt – DKFZ, Germany | Flex Lab A & B |
09:55 – 10:40 | Lecture: Conventional vs Spectral Flow Cytometry Sophie Novault – Institut Pasteur, France | Flex Lab A & B |
10:40 – 11:00 | Coffee break | Flex Lab A & B |
11:00 – 11:45 | Lecture: Image-based Cell Sorting Mark Dessing – BD, Germany | Flex Lab A & B |
11:45 – 12:30 | Lecture: Imaging applications in real life Marta Rodriguez – EMBL Heidelberg, Germany Moritz Winker – EMBL Heidelberg, Germany | Flex Lab A & B |
12:30 – 13:30 | Lunch | EMBL Canteen |
13:30 – 16:00 | Discussion session: share topics of interest, open questions All participants and speakers/trainers | Flex Lab A & B |
16:00 – 16:30 | Coffee Break | Flex Lab A & B |
16:30 – 17:15 | Lecture: How to choose a sorter? Claudia Dumrese – University of Zurich, Switzerland | Flex Lab A & B |
17:15 – 18:00 | Lecture: Best analysis tools Christopher Hall – Babraham Institute, UK | Flex Lab A & B |
18:00 – 18:45 | Departure to downtown | ATC Entrance |
18:45 | Dinner downtown |
Time (Europe/Berlin) | Speaker | Location |
---|---|---|
08:20 – 08:55 | Bus from hotel to EMBL ATC Entrance and to DKFZ | ISG Hotel |
09:00 – 09:10 | Overview of the day | Flex Lab A & B |
09:10 – 10:40 | Practical Session 2: Running Different Sorter Types Group 1: DKFZ – Fusion/A Group 2: DKFZ – Discover/A Group 3: EMBL – Fusion/A Group 4: EMBL – Discover/A All speakers/trainers | DKFZ EMBL |
10:40 – 11:10 | Coffee break | Flex Lab A & B |
11:10 – 12:40 | Continue: Practical Session 2: Running Different Sorter Types Group 1: DKFZ – Fusion/A Group 2: DKFZ – Discover/A Group 3: EMBL – Fusion/A Group 4: EMBL – Discover/A All speakers/trainers | DKFZ EMBL |
12:40 – 13:40 | Lunch | EMBL / DKFZ Canteen |
13:40 – 15:30 | Practical Session 3: Running Different Sorter Types Group 1: DKFZ – Fusion/B Group 2: DKFZ – Discover/B Group 3: EMBL – Fusion/B Group 4: EMBL – Discover/B All speakers/trainers | DKFZ EMBL |
15:30 – 16:00 | Coffee break | Flex Lab A & B |
16:00 – 18:00 | Continue: Practical Session 3: Running Different Sorter Types Group 1: DKFZ – Fusion/B Group 2: DKFZ – Discover/B Group 3: EMBL – Fusion/B Group 4: EMBL – Discover/B All speakers/trainers | DKFZ EMBL |
18:00 | Departure to ISG Hotel / Downtown | ATC Entrance |
18:00 | Free evening |
Time (Europe/Berlin) | Speaker | Location |
---|---|---|
08:20 – 08:55 | Bus from hotel to EMBL ATC Entrance and to DKFZ | ISG Hotel |
09:00 – 09:10 | Overview of the day | Flex Lab A & B |
09:10 – 10:40 | Practical Session 4: Running Different Sorter Types Group 1: EMBL – Discover/A Group 2: EMBL – Fusion/A Group 3: DKFZ – Discover/A Group 4: DKFZ – Fusion/A All speakers/trainers | EMBL DKFZ |
10:40 – 11:10 | Coffee break | Flex Lab A & B |
11:10 – 12:40 | Continue: Practical Session 4: Running Different Sorter Types Group 1: EMBL – Discover/A Group 2: EMBL – Fusion/A Group 3: DKFZ – Discover/A Group 4: DKFZ – Fusion/A All speakers/trainers | EMBL DKFZ |
12:40 – 13:40 | Lunch | EMBL / DKFZ Canteen |
13:40 – 15:30 | Practical Session 5: Running Different Sorter Types Group 1: EMBL – Discover/B Group 2: EMBL – Fusion/B Group 3: DKFZ – Discover/B Group 4: DKFZ – Fusion/B All speakers/trainers | EMBL DKFZ |
15:30 – 16:00 | Coffee break | Flex Lab A & B |
16:00 – 18:00 | Continue: Practical Session 5: Running Different Sorter Types Group 1: EMBL – Discover/B Group 2: EMBL – Fusion/B Group 3: DKFZ – Discover/B Group 4: DKFZ – Fusion/B All speakers/trainers | EMBL DKFZ |
18:00 – 18:30 | Departure to ISG Hotel / Downtown | ATC Entrance |
18:30 | Dinner and bowling |
Time (Europe/Berlin) | Speaker | Location |
---|---|---|
08:40 – 08:55 | Bus from hotel to EMBL ATC Entrance | ISG Hotel |
09:00 – 09:10 | Overview of the day | Flex Lab A & B |
09:10 – 09:55 | Lecture: Best practices Désirée Kunkel – BIH at Charité – Universitätsmedizin Berlin, Germany | Flex Lab A & B |
09:55 – 10:40 | Lecture: Tips for publishing high quality cytometry data Derek Davies – Cytometry, UK | Flex Lab A & B |
10:40 – 11:10 | Coffee Break | Flex Lab A & B |
11:10 – 12:40 | Interactive discussion session: Troubleshooting tips and tricks Beata Ramasz – EMBL Heidelberg, Germany Diana Ordonez – EMBL Heidelberg, Germany | Flex Lab A & B |
12:40 – 13:40 | Lunch | EMBL Canteen |
13:40 – 14:40 | Feedback and discussion | Flex Lab A & B |
14:40 | Departure to Heidelberg Train Station and Downtown | EMBL Bus Stop / ATC Entrance |
The course is limited to 16 participants. For selection purposes, please note that your application will not be considered without a letter of motivation.
This EMBO course includes accommodation and transportation to and from the ISG Hotel to the venue.
Academia | €500 |
PhD Student | €500 |
Industry | €1000 |
A letter to support your visa application will be issued, on request, once payment of the registration fee is confirmed. We recommend that you book your visa appointment as soon as possible, to avoid any delay with your visa application.
The registration fee should be paid only after acceptance to the course. The results will be announced approximately 2-3 weeks after the application deadline.
After you have logged in and successfully registered, you will receive an email asking you to submit your motivation letter. Click on the link provided and enter your motivation letter in the text box provided. Alternatively you can submit your motivation letter by clicking on the link on the confirmation page directly after registering.
Instructions
Please note:
For detailed instructions, please watch our video on how to submit a course motivation letter.
For further information about registration and motivation letter submission please refer to the FAQ page.
Limited financial assistance is provided by the EMBL Advanced Training Centre Corporate Partnership Programme and EMBO in the form of registration fee waivers, travel grants and childcare grants.
Your place in the meeting is only confirmed by paying the registration fee, which is mandatory even when receiving a fee waiver.
The fee waiver will cover the registration sum that you have paid to attend the course.
The travel grant will cover the cost of travel (airfare, train, bus, taxi, accommodation, visa, and/or registration fees*) and is provided up to specified caps which are normally as follows:
– up to €400 for participants travelling to an EMBL Course within Europe.
– up to €1000 for participants travelling to an EMBL Course from outside Europe.
– up to €500 for any participant travelling to an EMBO Practical Course.
– up to €1000 for any participant working in Chile, India, Singapore or Taiwan travelling to an EMBO Practical Course.
– up to €700 for any participant working in Croatia, Czech Republic, Estonia, Greece, Hungary, Italy, Lithuania, Luxembourg, Poland, Slovenia, and Turkey travelling to an EMBO Practical Course.
*Registration fees are only covered for EMBO Practical Courses
The organisers may reduce the grant cap to accommodate more participants. Recipients will be notified of their travel cap amount when they are informed of the outcome of their application. Original receipts must be provided with your signature for all costs incurred within two months of completion of travel. Scanned copies cannot be accepted.
There is the possibility to apply for a childcare grant to offset child care costs incurred by participants, speakers, trainers and organisers when attending a course. Eligible costs include (but are not limited to) fees for a babysitter or child-care facility and travel costs for a caregiver. Please note that priority will be given to early-stage researchers. There is a limited amount of funding available for the childcare grants and funds will be distributed amongst eligible applicants.
Applies to selected courses only. Availability will be indicated during the motivation letter submission process.
This grant covers costs related to your attendance at the course (registration, travel and accommodation costs). The grant is restricted to PhD students and postdocs who conduct basic biomedical research.
Whether you are eligible to apply for a travel grant, depends on when you received your university entrance qualification (e.g. Abitur, A-Levels, High School Diploma, Final State Examination):
– for PhD and MD students, as well as graduates, the university entrance qualification must not have been obtained more than 11 years ago at the time of the envisaged course
– for postdocs, the university entrance qualification must not have been obtained more than 13 years ago at the time of the envisaged course
You may apply for financial assistance when submitting your motivation letter for courses. In your application, you will be asked to answer questions regarding why your lab cannot fund your attendance and how your attendance will make a difference to your career. Application for financial support will not affect the outcome of your registration application.
For the Boehringer Ingelheim Fonds Travel Grant, there is a pre-application question during the motivation letter submission process, and if selected you will be requested to complete a standard form and documentation consisting of your travel expense estimation.
The scientific organisers will select the recipients of registration fee waivers and travel grants during the motivation letter or abstract selection process. Results will be announced approximately 6 – 8 weeks before the event start date, however for some events this may be delayed. Selection results do not impact your admission to the meeting. Selection for registration fee waivers and travel grants is based on scientific merit, your current work or study location, the reasons for needing financial support, and the impact this event will have on your career.
Childcare grants will be allocated in the same timeframe (6-8 weeks before the event start date). Please note that priority will be given to early-stage researchers.
Costs will be reimbursed after the meeting only once a reimbursement form and original receipts (from travel costs) have been received.
See our list of external funding opportunities and for further information about financial assistance please refer to the FAQ page.
For travel information, please see here.
If you are travelling to the conference within Germany then you are eligible for the Deutsche Bahn ‘Event Ticket’ (called the ‘Veranstaltungsticket’ in German). This will result in a lower ticket price if your travel distance to Heidelberg is more than 100 km. You need to provide proof of your event attendance when purchasing the ticket.
For more information in English see here or in German see here.
You can book your ticket here.
Accommodation in single rooms, including breakfast, is included in the registration fee. Accommodation has been booked for you at the ISG Hotel for the default dates of Sunday 3 to Friday 8 November (5 nights). Any additional nights need to be booked and paid for by you. We recommend that all course participants stay at the ISG Hotel which is the dedicated hotel for the course.
Shuttle buses will go from the ISG Hotel to EMBL and back, mornings and evenings. A bus schedule and location of the bus stops will be made available prior to the meeting.
Address: EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany
For more information about accommodation and travel, please refer to the FAQ page.
All meals and coffee breaks are included in the registration fee. Our catering staff will prepare a wide variety of vegetarian meals, meat and fish dishes, soups, pasta, fresh fruit and vegetables, as well as a variety of desserts.
Please wear your badge at all times when serving yourself.
No food or drinks are allowed in the laboratories.
In most places the electricity is 220 volts AC (50 cycles). An adaptor and a plug that fits the German socket may be needed for your appliances/laptop (i.e. American, Japanese, etc.). A USB charging station for electronic devices is available at the registration desk.
If you are interested in purchasing EMBL merchandise (products presented in the glass display in the registration area), please email the EMBL shop to place an order or get in contact with your Course Organiser.
Kindly note the EMBL shop is only open upon request and all purchases must be made in cash (Euros only).
Please read EMBL’s COVID-19 safety policy for on-site events.
Do not smoke in any EMBL building.
Eating and drinking is prohibited in all laboratories.
Do not enter any restricted areas or the laboratories unless instructed to do so.
If first aid is required …
In case of fire …
Beyond first aid…
Please remember to bring your own medication, if needed, to the conference. Note that the next pharmacy is a 4-minute drive from the EMBL, but for many medications you will be required to see a doctor to get a prescription.
Ensure in advance that your medical insurance will cover you during your visit in the event that you do need to see a doctor while in Heidelberg. In any case, the EMBL Course and Conference Office will assist you to get to the pharmacy and a doctor of your choice if necessary.
Wi-Fi is available on campus. Log in using the EMBL-Events network and the event specific password, which will be provided on site. The eduroam network (secure, worldwide roaming access service developed for the international research and education community) is also available.
‘’Lost and Found’’ items are kept at the registration desk until the end of the conference.
There are lockers available on-site to store your luggage, which require a 2 EURO coin to operate. There is another luggage room on level E0, which is free to use but remains unlocked during the conference.
There is a nursing room available in the ATC Rooftop Lounge on level A29.
During the conference, an EMBL Photographer may be taking photos. If you would not like to appear in these, please inform the photographer or a member of the Course and Conference Office.
We can help to print your boarding pass/train ticket. Please send it to events@embl.de and collect your print-outs at the registration desk.
There is a room for prayer, meditation, and yoga located on level E0 behind the Auditorium. Please be respectful of others using the room.
A variety of activities in Heidelberg can be found on the website of Heidelberg Marketing.
During the event, we provide conference shuttle buses to and from EMBL. In addition, there is the public bus 39A that serves the EMBL campus and taxis can be easily booked at any time. Information on the shuttle buses can be found on the individual event website and more detailed information on travelling to EMBL can be found on our Travel Information page.
Address: EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany
Please find additional information including FAQs, terms and conditions, COVID-19 safety policy and travelling to EMBL on our Information for Participants page.
The EMBL eCampus learning platform will be used to collaborate, communicate and network with all of the course participants. All participants will receive information on how to join shortly before the course. We recommend using Chrome, Safari or Mozilla Firefox browsers for eCampus.
Please find additional information including FAQs, terms and conditions, COVID-19 safety policy and travelling to EMBL on our Information for Participants page.
COVID-19 information for on-site events at EMBL Heidelberg can be found in our COVID-19 FAQs.
Event Sponsor
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Sponsorship opportunities
We offer a variety of event sponsoring possibilities, with the flexibility to select a set sponsorship package or combine individual sponsorship options to suit your event budget. Discounts are available for companies sponsoring multiple events at EMBL Heidelberg. View other events, or contact sponsorship@embl.de for further information.
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Please also note that:
Suspicious communications purportedly from, for or on behalf of EMBL should be reported to EMBL at the following email address sponsorship@embl.de.
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Date: 4 - 8 Nov 2024
Location: EMBL Heidelberg
Venue: EMBL Advanced Training Centre
Deadline(s):
Application: Closed
Organisers:
Contact: Maria Bacadare