Tanmay Bharat
MRC Laboratory of Molecular Biology
UK
EMBO Practical Course
Technology advances in cryo-electron microscopy (cryoEM) over the last decade have transformed our understanding of biomolecular structures across different spatial scales. CryoEM has unique capabilities for obtaining structural information in situ, within complex (cellular) environments, and to obtain atomic-level structures of biologically flexible and heterogeneous macromolecular assemblies. With the advent of the cryoEM ‘resolution revolution’, the method has undergone a tremendous growth in user base. Yet, emerging breakthroughs, such as new (correlated) imagine technologies and in AI-based image processing, demonstrate the potential for cryoEM to make another leap forward towards new frontiers. Therefore, in depth advanced training is essential to ensure future generations can adapt such emerging technologies to expand into new areas of biological research. This course provides the theoretical and practical foundations of advanced cryoEM techniques, from sample preparation to data collection to image processing.
To meet the exceptional demand of the field for advanced training, this course is aimed at PhD students and postdocs with basic experience in cryoEM and 3D image processing.
During this course we will focus on the following aspects:
The course will enable participants to seamlessly integrate single particle analysis and tomography approaches to their cutting-edge research, disseminate their gained expertise to colleagues and, eventually, to innovate cryoEM methods beyond the state-of-the-art.
“This a world-class course. The access to experts and cutting-edge techniques is incredible.” – Corbin Black, McGill University, Canada
This event has been granted the following EMBO sustainability badge:
The EMBL Imaging Centre training activities are generously supported by the Boehringer Ingelheim Foundation.
MRC Laboratory of Molecular Biology
UK
Genentech
USA
Chan Zuckerberg Imaging Institute
USA
(Virtual speaker)
EMBL Heidelberg
Germany
University of Massachusetts Medical School
USA
EMBL Heidelberg
Germany
Princeton University
USA
EMBL Heidelberg
Germany
Lawrence Berkeley National Laboratory
USA
(Virtual speaker)
Princeton University
USA
University of Massachusetts Medical School
USA
Max Planck Institute of Biochemistry
Germany
EMBL Heidelberg
Germany
EMBL Hamburg
Germany
University of Bern
Switzerland
UKRI STFC
UK
MRC Laboratory of Molecular Biology
UK
Heidelberg University
Germany
Princeton University
USA
EMBL Heidelberg
Germany
MRC Laboratory of Molecular Biology
UK
Forschungszentrum Jülich
Germany
MRC Laboratory of Molecular Biology
UK
(Virtual speaker)
EMBL Heidelberg
Germany
EMBL Heidelberg
Germany
Genentech
USA
Max Planck Institute of Biophysics
Germany
(Virtual speaker)
MRC Laboratory of Molecular Biology
UK
EMBL Heidelberg
Germany
Princeton University
USA
(Virtual speaker)
MRC Laboratory of Molecular Biology
UK
EMBL Heidelberg
Germany
EMBL Heidelberg
Germany
EMBL Heidelberg
Germany
Scientific Training Manager
EMBL Heidelberg
Germany
Course and Conference Manager
EMBL Heidelberg
Germany
Are you on social media? Post using #EMBOCryoEM and don’t forget to tag @EMBLEvents.
Time (Europe/Berlin) | Programme | Location |
---|---|---|
12:00 – 13:30 | Virtual onboarding session and introduction to EMBL e-Campus and how to view recorded lectures | Virtual |
Time (Europe/Berlin | Programme | Location |
---|---|---|
15:00 – 15:40 | Registration and refreshments | ISG Hotel |
15:40 – 15:50 | Introduction and housenote slides Sebastian Eustermann – EMBL Heidelberg, Germany | ISG Hotel |
15:50 – 16:00 | Course overview | ISG Hotel |
16:00 – 17:00 | Student flash talks | ISG Hotel |
17:00 – 17:30 | Coffee break | ISG Hotel |
17:30 – 18:30 | Student flash talks | ISG Hotel |
18:30 – 19:45 | Remote Lecture 1: Past and future of cryoEM Robert Glaeser – Lawrence Berkeley National Laboratory, USA (virtual speaker) | ISG Hotel |
19:45 – 20:45 | Dinner | ISG Hotel |
Time (Europe/Berlin | Programme | Location |
---|---|---|
08:40 – 08:45 | Overview of the day | Courtyard Rooms |
08:45 – 09:05 | Industry talk: Automation in cryo-EM workflows Maximilian Gemmer – Thermo Fisher Scientific | Courtyard Rooms |
09:05 – 10:20 | Lecture: Cryo-EM image formation and optics Chris Russo – MRC Laboratory of Molecular Biology, UK | Courtyard Rooms |
10:20 – 10:50 | Coffee break kindly sponsored by DECTRIS | Courtyard Rooms |
10:50 – 12:05 | Lecture: Next generation: microscope hardware Carsten Sachse – Forschungszentrum Jülich, Germany | Courtyard Rooms |
12:05 – 13:05 | Lunch break | EMBL Canteen |
13:05 – 14:20 | Remote Lecture: Next generation: cryoEM single particle sample preparation & acquisition Kelly Nguyen – MRC Laboratory of Molecular Biology, UK | Courtyard Rooms |
14:20 – 15:35 | Lecture: cryoET sample preparation & acquisition Julia Mahamid – EMBL Heidelberg, Germany | Courtyard Rooms |
15:35 – 16:05 | Coffee break kindly sponsored by DECTRIS | Courtyard Rooms |
16:05 – 17:20 | Remote Lecture: Fundamentals in image processing: Maximum likelihood Sjors Scheres – MRC Laboratory of Molecular Biology, UK | Courtyard Rooms |
17:20 – 18:35 | EMBO Young Investigator Lecture: Fundamentals in image processing: cryoET Tanmay Bharat – MRC Laboratory of Molecular Biology, UK | Courtyard Rooms |
18:35 – 19:35 | Dinner | EMBL Canteen |
Time (Europe/Berlin | Programme | Location |
---|---|---|
08:40 – 08:45 | Overview of the day | Courtyard Rooms |
08:45 – 09:05 | Industry talk Andrew Smith – Kleindiek Nanotechnik, Germany | Courtyard Rooms |
09:05 – 10:20 | Next generation: High resolution by cryo ET subtomogram averaging Dimitry Tegunov – Genentech, USA | Courtyard Rooms |
10:20 – 10:40 | Coffee break kindly sponsored by DECTRIS | Courtyard Rooms |
10:40 – 11:55 | Next generation: 2D template matching and beyond Nikolaus Grigorieff – University of Massachusetts Medical School, USA | Courtyard Rooms |
11:55 – 12:25 | Panel discussion: Hardware and sample preparation Panel leaders: Simone Mattei and Julia Mahamid – EMBL Heidelberg, Germany | Courtyard Rooms |
12:25 – 13:25 | Lunch break | EMBL Canteen |
13:25 – 15:55 | Practical session A Session 1 on Advanced cryoEM single particle analysis | RelionSPA topic Sebastian Eustermann – EMBL Heidelberg, Germany Session 2 on Advanced cryoEM single particle analysis | cyroSPARC SPA topic Hui Guo – Max Planck Institute of Biochemistry, Germany Session 3 on Advanced cryoET subtomogram averaging | Relion Tomo topic Tanmay Bharat – MRC Laboratory of Molecular Biology, UK Andriko von Kügelgen – MRC Laboratory of Molecular Biology, UK Session 4 on Advanced cryoET subtomogram averaging | WARP/M Tomo topic Dimitry Tegunov – Genentech, USA Joe Dobbs – EMBL Heidelberg, Germany Rasmus Kjeldsen Jensen – EMBL Heidelberg, Germany Session 5 on Model building, refinement and validation Colin Palmer – UKRI STFC, UK | Session 1: Courtyard Rooms Session 2: Flex Lab B Session3: Flex Lab A Session 4: Computer Training Lab Session 5: Helix Seminar Room B |
15:55 – 16:25 | Coffee break kindly sponsored by DECTRIS | Courtyard Rooms |
16:25 – 18:55 | Practical session B Session 1 on Advanced cryoEM single particle analysis | RelionSPA topic (cont.) Sebastian Eustermann – EMBL Heidelberg, Germany Session 2 on Advanced cryoEM single particle analysis | cyroSPARC SPA topic (cont.) Hui Guo – Max Planck Institute of Biochemistry, Germany Session 3 on Advanced cryoET subtomogram averaging | Relion Tomo topic (cont.) Tanmay Bharat – MRC Laboratory of Molecular Biology, UK Andriko von Kügelgen – MRC Laboratory of Molecular Biology, UK Session 4 on Advanced cryoET subtomogram averaging | WARP/M Tomo topic (cont.) Dimitry Tegunov – Genentech, USA Joe Dobbs – EMBL Heidelberg, Germany Rasmus Kjeldsen Jensen – EMBL Heidelberg, Germany Session 5 on Model building, refinement and validation (cont.) Colin Palmer – UKRI STFC, UK | Session 1: Courtyard Rooms Session 2: Flex Lab B Session3: Flex Lab A Session 4: Computer Training Lab Session 5: Helix Seminar Room B |
18:55 – 19:55 | Canteen dinner | EMBL Canteen |
19:55 – 20:55 | Remote Lecture: Hot topics: recent breakthroughs and emerging technologies Bridget Carragher – Chan Zuckerberg Imaging Institute, USA | Courtyard Rooms |
20:55 – 21:25 | Discussion round: Hot topics: recent breakthroughs and emerging technologies | Courtyard Rooms |
Time (Europe/Berlin | Programme | Location |
---|---|---|
09:00 – 09:05 | Overview of the day | Courtyard Rooms |
09:05 – 10:20 | Remote Lecture: Advances in cryoET particle identification Beata Turonova – Max Planck Institute of Biophysics, Germany | Courtyard Rooms |
10:20 – 10:40 | Coffee break kindly sponsored by SubAngstrom | Courtyard Rooms |
10:40 – 11:55 | Lecture: AI-based methods: Molecular heterogeneity landscapes from cryoEM and cryoET Rishwanth Raghu – Princeton University, USA | Courtyard Rooms |
11:55 – 12:55 | Technology Lunch: Complete CryoEM Solutions Mark Ebrahim – SubAngstrom, USA | Rooftop Lounge |
12:55 – 13:25 | Panel discussion: Software and image processing Panel leaders: Sebastian Eustermann – EMBL Heidelberg, Germany and Tanmay Bharat – MRC Laboratory of Molecular Biology, UK | Courtyard Rooms |
13:25 – 15:55 | Practical session C Session 1 on Advanced cryoEM single particle analysis | RelionSPA topic (cont.) Sebastian Eustermann – EMBL Heidelberg, Germany Session 2 on Advanced cryoEM single particle analysis | cyroSPARC SPA topic (cont.) Hui Guo – Max Planck Institute of Biochemistry, Germany Session 3 on Advanced cryoET subtomogram averaging | Relion Tomo topic (cont.) Tanmay Bharat – MRC Laboratory of Molecular Biology, UK Andriko von Kügelgen – MRC Laboratory of Molecular Biology, UK Session 4 on Advanced cryoET subtomogram averaging | WARP/M Tomo topic (cont.) Dimitry Tegunov – Genentech, USA Session 5 on Model building, refinement and validation (cont.) Colin Palmer – UKRI STFC, UK | Session 1: Courtyard Rooms Session 2: Flex Lab B Session3: Flex Lab A Session 4: Computer Training Lab Session 5: Helix Seminar Room B |
15:55 – 16:25 | Coffee break kindly sponsored by SubAngstrom | Courtyard Rooms |
16:25 – 18:55 | Practical session D Session 1 on Advanced cryoEM single particle analysis | RelionSPA topic (cont.) Sebastian Eustermann – EMBL Heidelberg, Germany Session 2 on Advanced cryoEM single particle analysis | cyroSPARC SPA topic (cont.) Hui Guo – Max Planck Institute of Biochemistry, Germany Session 3 on Advanced cryoET subtomogram averaging | Relion Tomo topic (cont.) Tanmay Bharat – MRC Laboratory of Molecular Biology, UK Andriko von Kügelgen – MRC Laboratory of Molecular Biology, UK Session 4 on Advanced cryoET subtomogram averaging | WARP/M Tomo topic (cont.) Dimitry Tegunov – Genentech, USA Joe Dobbs – EMBL Heidelberg, Germany Session 5 on Model building, refinement and validation (cont.) Colin Palmer – UKRI STFC, UK | Session 1: Courtyard Rooms Session 2: Flex Lab B Session3: Flex Lab A Session 4: Computer Training Lab Session 5: Helix Seminar Room B |
18:55 – 19:55 | Pizza dinner | Helix B |
19:55 – 20:55 | Poster session with drinks (12 posters) | Helix B |
Time (Europe/Berlin | Programme | Location |
---|---|---|
09:00 – 09:05 | Overview of the day | Courtyard Rooms |
09:05 – 10:05 | Lecture: Next generation: Atomic model building, refinement and validation Sebastian Eustermann – EMBL Heidelberg, Germany | Courtyard Rooms |
10:05 – 11:05 | Lecture: Next generation: integrative model building Jan Kosinski – EMBL Hamburg, Germany | Courtyard Rooms |
11:05 – 11:35 | Coffee break kindly sponsored by CEOS GmbH | Courtyard Rooms |
11:35 – 12:35 | EMDB and EMPIAR Data repositories Kyle Morris – EMBL-EBI, UK | Courtyard Rooms |
12:35 – 13:05 | Panel discussion: Validation and FAIR data Panel leader: Lori Passmore – MRC Laboratory of Molecular Biology, UK and Sebastian Eustermann – EMBL Heidelberg, Germany | Courtyard Rooms |
13:05 – 14:05 | Technology Lunch: Can aberration correctors help in cryo-electron microscopy? Heiko Müller – CEOS, Germany | Rooftop Lounge |
14:05 – 16:35 | Practical session E Session 1 on Advanced cryoEM single particle analysis | RelionSPA topic (cont.) Sebastian Eustermann – EMBL Heidelberg, Germany Session 2 on Advanced cryoEM single particle analysis | cyroSPARC SPA topic (cont.) Hui Guo – Max Planck Institute of Biochemistry, Germany Session 3 on Advanced cryoET subtomogram averaging | Relion Tomo topic (cont.) Tanmay Bharat – MRC Laboratory of Molecular Biology, UK Andriko von Kügelgen – MRC Laboratory of Molecular Biology, UK Session 4 on Advanced cryoET subtomogram averaging | WARP/M Tomo topic (cont.) Dimitry Tegunov – Genentech, USA Joe Dobbs – EMBL Heidelberg, Germany Rasmus Kjeldsen Jensen – EMBL Heidelberg, Germany Session 5 on Model building, refinement and validation (cont.) Colin Palmer – UKRI STFC, UK Session 6 on Macromolecular Heterogeneity Analysis | cryoDRGN topic (cont.) Ryan Feathers – Princeton University, USA Rishwanth Raghu – Princeton University, USA Session 7 2D template matching (cont.) Nikolaus Grigorieff – University of Massachusetts Medical School, USA | Session 1: Courtyard Rooms Session 2: Flex Lab B Session3: Flex Lab A Session 4: Computer Training Lab Session 5: Helix Seminar Room B Session 6: B11 Session 7: B28 |
16:35 – 17:05 | Coffee break kindly sponsored by CEOS GmbH | Courtyard Rooms |
17:05 – 19:35 | Practical session F Session 1 on Advanced cryoEM single particle analysis | RelionSPA topic (cont.) Sebastian Eustermann – EMBL Heidelberg, Germany Session 2 on Advanced cryoEM single particle analysis | cyroSPARC SPA topic (cont.) Hui Guo – Max Planck Institute of Biochemistry, Germany Session 3 on Advanced cryoET subtomogram averaging | Relion Tomo topic (cont.) Tanmay Bharat – MRC Laboratory of Molecular Biology, UK Andriko von Kügelgen – MRC Laboratory of Molecular Biology, UK Session 4 on Advanced cryoET subtomogram averaging | WARP/M Tomo topic (cont.) Dimitry Tegunov – Genentech, USA Joe Dobbs – EMBL Heidelberg, Germany Rasmus Kjeldsen Jensen – EMBL Heidelberg, Germany Session 5 on Model building, refinement and validation (cont.) Colin Palmer – UKRI STFC, UK Session 6 on Macromolecular Heterogeneity Analysis | cryoDRGN topic Ryan Feathers – Princeton University, USA Rishwanth Raghu – Princeton University, USA Session 7 2D template matching Nikolaus Grigorieff – University of Massachusetts Medical School, USA Johannes Elferich – University of Massachusetts Medical School, USA | Session 1: Courtyard Rooms Session 2: Flex Lab B Session3: Flex Lab A Session 4: Computer Training Lab Session 5: Helix Seminar Room B Session 6: B11 Session 7: B28 |
19:35 – 20:35 | Dinner | EMBL Canteen |
20:35 – 21:35 | Poster session with drinks (12 posters) | Helix B |
Time (Europe/Berlin | Programme | Location |
---|---|---|
09:00 – 09:05 | Overview of the day | Courtyard Rooms |
09:05 – 10:20 | High Throughput and Resolution Data collection Simone Mattei – EMBL Heidelberg, Germany | Courtyard Rooms |
10:20 – 11:35 | Correlative light and electron microscopy for Structural Cell Biology Wanda Kukulski – University of Bern, Switzerland | Courtyard Rooms |
11:35 – 11:55 | Coffee break kindly sponsored by SubAngstrom | Courtyard Rooms |
11:55 – 12:25 | Panel discussion: Data acquisition Panel leader: Simone Mattei – EMBL Heidelberg, Germany | Courtyard Rooms |
12:25 – 13:25 | Lunch break | EMBL Canteen |
13:25 – 15:55 | Practical Session G Session 1 on Advanced cryoEM single particle analysis | RelionSPA topic (cont.) Sebastian Eustermann – EMBL Heidelberg, Germany Session 2 on Advanced cryoEM single particle analysis | cyroSPARC SPA topic (cont.) Hui Guo – Max Planck Institute of Biochemistry, Germany Session 3 on Advanced cryoET subtomogram averaging | Relion Tomo topic (cont.) Tanmay Bharat – MRC Laboratory of Molecular Biology, UK Andriko von Kügelgen – MRC Laboratory of Molecular Biology, UK Session 4 on Advanced cryoET subtomogram averaging | WARP/M Tomo topic (cont.) Dimitry Tegunov – Genentech, USA Alister Burt – Genentech, USA Joe Dobbs – EMBL Heidelberg, Germany Rasmus Kjeldsen Jensen – EMBL Heidelberg, Germany Session 5 on Model building, refinement and validation (cont.) Colin Palmer – UKRI STFC, UK Session 6 on Macromolecular Heterogeneity Analysis | cryoDRGN topic (cont.) Ryan Feathers – Princeton University, USA Rishwanth Raghu – Princeton University, USA Session 7 2D template matching (cont.) Nikolaus Grigorieff – University of Massachusetts Medical School, USA Johannes Elferich – University of Massachusetts Medical School, USA | Session 1: Courtyard Rooms Session 2: Flex Lab B Session3: Flex Lab A Session 4: Computer Training Lab Session 5: Helix Seminar Room B Session 6: B11 Session 7: B28 |
15:55 – 16:25 | Coffee break kindly sponsored by SubAngstrom | Courtyard Rooms |
16:25 – 18:55 | Practical Session H Session 1 on Advanced cryoEM single particle analysis | RelionSPA topic (cont.) Sebastian Eustermann – EMBL Heidelberg, Germany Session 2 on Advanced cryoEM single particle analysis | cyroSPARC SPA topic (cont.) Hui Guo – Max Planck Institute of Biochemistry, Germany Session 3 on Advanced cryoET subtomogram averaging | Relion Tomo topic (cont.) Tanmay Bharat – MRC Laboratory of Molecular Biology, UK Andriko von Kügelgen – MRC Laboratory of Molecular Biology, UK Session 4 on Advanced cryoET subtomogram averaging | WARP/M Tomo topic (cont.) Dimitry Tegunov – Genentech, USA Alister Burt – Genentech, USA Joe Dobbs – EMBL Heidelberg, Germany Rasmus Kjeldsen Jensen – EMBL Heidelberg, Germany Session 5 on Model building, refinement Colin Palmer – UKRI STFC, UK Session 6 on Macromolecular Heterogeneity Analysis | cryoDRGN topic (cont.) Ryan Feathers – Princeton University, USA Rishwanth Raghu – Princeton University, USA Session 7 2D template matching (cont.) Nikolaus Grigorieff – University of Massachusetts Medical School, USA Johannes Elferich – University of Massachusetts Medical School, USA | Session 1: Courtyard Rooms Session 2: Flex Lab B Session3: Flex Lab A Session 4: Computer Training Lab Session 5: Helix Seminar Room B Session 6: B11 Session 7: B28 |
18:55 – 19:55 | Dinner in EMBL Canteen | EMBL Canteen |
19:55 – 20:25 | Lecture: cryoEM careers in academia and pharma Dimitry Tegunov – Genentech, USA | Courtyard Rooms |
20:25 – 21:25 | Discussion round: Career paths | Courtyard Rooms |
Time (Europe/Berlin | Programme | Location |
---|---|---|
10:00 – 10:05 | Overview of the day | Courtyard Rooms |
10:05 – 12:05 | Practical Session I – Drop in session Session 1 on Advanced cryoEM single particle analysis | RelionSPA topic (cont.) Sebastian Eustermann – EMBL Heidelberg, Germany Session 2 on Advanced cryoEM single particle analysis | cyroSPARC SPA topic (cont.) Hui Guo – Max Planck Institute of Biochemistry, Germany Session 3 on Advanced cryoET subtomogram averaging | Relion Tomo topic (cont.) Tanmay Bharat – MRC Laboratory of Molecular Biology, UK Andriko von Kügelgen – MRC Laboratory of Molecular Biology, UK Session 4 on Advanced cryoET subtomogram averaging | WARP/M Tomo topic (cont.) Dimitry Tegunov – Genentech, USA Alister Burt – Genentech, USA Joe Dobbs – EMBL Heidelberg, Germany Rasmus Kjeldsen Jensen – EMBL Heidelberg, Germany Session 6 on Macromolecular Heterogeneity Analysis | cryoDRGN topic (cont.) Ryan Feathers – Princeton University, USA Rishwanth Raghu – Princeton University, USA Session 7 2D template matching (cont.) Nikolaus Grigorieff – University of Massachusetts Medical School, USA Johannes Elferich – University of Massachusetts Medical School, USA Session 8 on Cryo-TEM Simon Fromm – EMBL Heidelberg, Germany Session 9 on Cryo-LM/FIB-SEM Zhengyi Yang – EMBL Heidelberg, Germany Session 10 on HPF/Waffle prep Anna Steyer – EMBL Heidelberg, Germany | Session 1: Courtyard Rooms Session 2: Flex Lab B Session3: Flex Lab A Session 4: Computer Training Lab Session 5: Helix Seminar Room B Session 6: B11 Session 7: B28 Session 8, 9 , 10: Imaging Center |
12:05 – 13:05 | Lunch break | EMBL Canteen |
13:05 – 15:05 | Practical Session J – Drop in session Session 1 on Advanced cryoEM single particle analysis | RelionSPA topic (cont.) Sebastian Eustermann – EMBL Heidelberg, Germany Session 2 on Advanced cryoEM single particle analysis | cyroSPARC SPA topic (cont.) Hui Guo – Max Planck Institute of Biochemistry, Germany Session 3 on Advanced cryoET subtomogram averaging | Relion Tomo topic (cont.) Tanmay Bharat – MRC Laboratory of Molecular Biology, UK Andriko von Kügelgen – MRC Laboratory of Molecular Biology, UK Session 4 on Advanced cryoET subtomogram averaging | WARP/M Tomo topic (cont.) Dimitry Tegunov – Genentech, USA Alister Burt – Genentech, USA Joe Dobbs – EMBL Heidelberg, Germany Rasmus Kjeldsen Jensen – EMBL Heidelberg, Germany Session 5 on Model building, refinement and validation (cont.) Sebastian Eustermann – EMBL Heidelberg, Germany Session 6 on Macromolecular Heterogeneity Analysis | cryoDRGN topic (cont.) Ryan Feathers – Princeton University, USA Rishwanth Raghu – Princeton University, USA Session 7 2D template matching (cont.) Nikolaus Grigorieff – University of Massachusetts Medical School, USA Johannes Elferich – University of Massachusetts Medical School, USA Session 8 on Cryo-TEM Simon Fromm – EMBL Heidelberg, Germany Session 9 on Cryo-LM/FIB-SEM Zhengyi Yang – EMBL Heidelberg, Germany Session 10 on HPF/Waffle prep Anna Steyer – EMBL Heidelberg, Germany | Session 1: Courtyard Rooms Session 2: Flex Lab B Session3: Flex Lab A Session 4: Computer Training Lab Session 5: Helix Seminar Room B Session 6: B11 Session 7: B28 Session 8, 9 , 10: Imaging Center |
15:05 – 15:25 | Coffee break | Courtyard Rooms |
15:25 – 17:25 | Practical Session K – Drop in session Session 1 on Advanced cryoEM single particle analysis | RelionSPA topic (cont.) Sebastian Eustermann – EMBL Heidelberg, Germany Session 2 on Advanced cryoEM single particle analysis | cyroSPARC SPA topic (cont.) Hui Guo – Max Planck Institute of Biochemistry, Germany Session 3 on Advanced cryoET subtomogram averaging | Relion Tomo topic (cont.) Tanmay Bharat – MRC Laboratory of Molecular Biology, UK Andriko von Kügelgen – MRC Laboratory of Molecular Biology, UK Session 4 on Advanced cryoET subtomogram averaging | WARP/M Tomo topic (cont.) Dimitry Tegunov – Genentech, USA Alister Burt – Genentech, USA Joe Dobbs – EMBL Heidelberg, Germany Rasmus Kjeldsen Jensen – EMBL Heidelberg, Germany Session 5 on Model building, refinement and validation (cont.) Sebastian Eustermann – EMBL Heidelberg, Germany Session 6 on Macromolecular Heterogeneity Analysis | cryoDRGN topic (cont.) Ryan Feathers – Princeton University, USA Rishwanth Raghu – Princeton University, USA Session 7 2D template matching (cont.) Nikolaus Grigorieff – University of Massachusetts Medical School, USA Johannes Elferich – University of Massachusetts Medical School, USA Session 8 on Cryo-TEM Simon Fromm – EMBL Heidelberg, Germany Session 9 on Cryo-LM/FIB-SEM Zhengyi Yang – EMBL Heidelberg, Germany Session 10 on HPF/Waffle prep Anna Steyer – EMBL Heidelberg, Germany | Session 1: Courtyard Rooms Session 2: Flex Lab B Session3: Flex Lab A Session 4: Computer Training Lab Session 5: Helix Seminar Room B Session 6: B11 Session 7: B28 Session 8, 9 , 10: Imaging Center |
17:25 – 19:25 | Free time downtown | |
19:25 – 21:25 | Dinner in city centre |
Time (Europe/Berlin | Programme | Location |
---|---|---|
10:00 – 10:05 | Overview of the day | Courtyard Rooms |
10:05 – 12:05 | Practical Session L – Drop in session Session 1 on Advanced cryoEM single particle analysis | RelionSPA topic (cont.) Sebastian Eustermann – EMBL Heidelberg, Germany Session 2 on Advanced cryoEM single particle analysis | cyroSPARC SPA topic (cont.) Hui Guo – Max Planck Institute of Biochemistry, Germany Session 3 on Advanced cryoET subtomogram averaging | Relion Tomo topic (cont.) Tanmay Bharat – MRC Laboratory of Molecular Biology, UK Andriko von Kügelgen – MRC Laboratory of Molecular Biology, UK Session 4 on Advanced cryoET subtomogram averaging | WARP/M Tomo topic (cont.) Dimitry Tegunov – Genentech, USA Alister Burt – Genentech, USA Joe Dobbs – EMBL Heidelberg, Germany Rasmus Kjeldsen Jensen – EMBL Heidelberg, Germany Session 5 on Model building, refinement and validation (cont.) Sebastian Eustermann – EMBL Heidelberg, Germany Session 6 on Macromolecular Heterogeneity Analysis | cryoDRGN topic (cont.) Ryan Feathers – Princeton University, USA Rishwanth Raghu – Princeton University, USA Session 7 2D template matching (cont.) Nikolaus Grigorieff – University of Massachusetts Medical School, USA Johannes Elferich – University of Massachusetts Medical School, USA Session 8 on Cryo-TEM Simon Fromm – EMBL Heidelberg, Germany Session 9 on Cryo-LM/FIB-SEM Zhengyi Yang – EMBL Heidelberg, Germany | Session 1: Courtyard Rooms Session 2: Flex Lab B Session3: Flex Lab A Session 4: Computer Training Lab Session 5: Helix Seminar Room B Session 6: B11 Session 7: B28 Session 8, 9: Imaging Center |
12:05 – 13:05 | Lunch break | EMBL Canteen |
13:05 – 15:05 | Practical Session M – Drop in session Session 1 on Advanced cryoEM single particle analysis | RelionSPA topic (cont.) Sebastian Eustermann – EMBL Heidelberg, Germany Session 2 on Advanced cryoEM single particle analysis | cyroSPARC SPA topic (cont.) Hui Guo – Max Planck Institute of Biochemistry, Germany Session 3 on Advanced cryoET subtomogram averaging | Relion Tomo topic (cont.) Tanmay Bharat – MRC Laboratory of Molecular Biology, UK Andriko von Kügelgen – MRC Laboratory of Molecular Biology, UK Session 4 on Advanced cryoET subtomogram averaging | WARP/M Tomo topic (cont.) Dimitry Tegunov – Genentech, USA Alister Burt – Genentech, USA Joe Dobbs – EMBL Heidelberg, Germany Rasmus Kjeldsen Jensen – EMBL, Germany Session 5 on Model building, refinement and validation (cont.) Sebastian Eustermann – EMBL Heidelberg, Germany Session 6 on Macromolecular Heterogeneity Analysis | cryoDRGN topic (cont.) Ryan Feathers – Princeton University, USA Rishwanth Raghu – Princeton University, USA Session 7 2D template matching (cont.) Nikolaus Grigorieff – University of Massachusetts Medical School, USA Johannes Elferich – University of Massachusetts Medical School, USA Session 8 on Cryo-TEM Simon Fromm – EMBL Heidelberg, Germany Session 9 on Cryo-LM/FIB-SEM Zhengyi Yang – EMBL Heidelberg, Germany | Session 1: Courtyard Rooms Session 2: Flex Lab B Session3: Flex Lab A Session 4: Computer Training Lab Session 5: Helix Seminar Room B Session 6: B11 Session 7: B28 Session 8, 9: Imaging Center |
15:05 – 15:35 | Coffee break | Courtyard Rooms |
15:35 – 17:35 | Practical Session N – Drop in session Session 1 on Advanced cryoEM single particle analysis | RelionSPA topic (cont.) Sebastian Eustermann – EMBL Heidelberg, Germany Session 2 on Advanced cryoEM single particle analysis | cyroSPARC SPA topic (cont.) Hui Guo – Max Planck Institute of Biochemistry, Germany Session 3 on Advanced cryoET subtomogram averaging | Relion Tomo topic (cont.) Tanmay Bharat – MRC Laboratory of Molecular Biology, UK Andriko von Kügelgen – MRC Laboratory of Molecular Biology, UK Session 4 on Advanced cryoET subtomogram averaging | WARP/M Tomo topic (cont.) Dimitry Tegunov – Genentech, USA Alister Burt – Genentech, USA Joe Dobbs – EMBL Heidelberg, Germany Rasmus Kjeldsen Jensen – EMBL Heidelberg, Germany Session 5 on Model building, refinement and validation (cont.) Sebastian Eustermann – EMBL Heidelberg, Germany Session 6 on Macromolecular Heterogeneity Analysis | cryoDRGN topic (cont.) Ryan Feathers – Princeton University, USA Rishwanth Raghu – Princeton University, USA Session 7 2D template matching (cont.) Nikolaus Grigorieff – University of Massachusetts Medical School, USA Johannes Elferich – University of Massachusetts Medical School, USA Session 8 on Cryo-TEM Simon Fromm – EMBL Heidelberg, Germany Session 9 on Cryo-LM/FIB-SEM Zhengyi Yang – EMBL Heidelberg, Germany | Session 1: Courtyard Rooms Session 2: Flex Lab B Session3: Flex Lab A Session 4: Computer Training Lab Session 5: Helix Seminar Room B Session 6: B11 Session 7: B28 Session 8, 9: Imaging Center |
17:35 – 18:50 | Poster session | Helix B |
18:50 – 19:50 | Canteen dinner | EMBL Canteen |
19:50 – 20:00 | Bus to ISG hotel | ATC Entrance |
20:00 – 21:00 | Lecture: Future of cell structural biology Julia Mahamid – EMBL Heidelberg, Germany | ISG Hotel |
Time (Europe/Berlin | Programme | Location |
---|---|---|
08:40 – 08:45 | Overview of the day | Courtyard Rooms |
08:45 – 09:45 | Lecture: Hot topics: recent breakthroughs and emerging technologies in structural biology via cryoET Svetlana Dodonova – EMBL Heidelberg, Germany | Courtyard Rooms |
09:45 – 10:45 | Lecture: Hot topics: recent breakthroughs and emerging technologies in structural biology via cryoEM Cristina Paulino – Heidelberg University, Germany | Courtyard Rooms |
10:45 – 11:15 | Coffee break | Courtyard Rooms |
11:15 – 12:15 | Wrap up practicals: highlights presented by participants | Courtyard Rooms |
12:15 – 13:15 | Final panel discussion: Wrap up with emphasis on the future of cryoEM, responsible practice, reporting and validation standards | Courtyard Rooms |
13:15 – 13:30 | Packed lunch and departure | ATC Entrance |
The course is limited to up to 24 participants. For selection purposes, please note that your application will not be considered without a letter of motivation.
Registration fees include admission, course materials, COVID-19 safety measures, meals and coffee breaks.
This EMBO course includes accommodation and transportation to and from the ISG Hotel to the venue.
Academia | €500 |
PhD Student | €500 |
Industry | €1000 |
The registration fee should be paid only after acceptance to the course. The results will be announced approximately 2-3 weeks after the application deadline.
After you have logged in and successfully registered, you will receive an email asking you to submit your motivation letter. Click on the link provided and enter your motivation letter in the text box provided. Alternatively you can submit your motivation letter by clicking on the link on the confirmation page directly after registering.
Instructions
Please note:
For more detailed information, follow the instructions provided in our video on how to submit a course motivation letter.
For further information about registration and motivation letter submission please refer to the FAQ page.
Limited financial assistance is provided by the EMBL Advanced Training Centre Corporate Partnership Programme and EMBO in the form of both registration fee waivers and travel grants. Availability is limited to participants attending on-site events in Heidelberg and will be indicated during the abstract or motivation letter submission process.
Your place in the meeting is only confirmed by paying the registration fee, which is mandatory even when receiving a fee waiver.
The fee waiver will cover the registration sum that you have paid to attend the course or conference.
The travel grant will cover the cost of travel (airfare, train, bus, taxi, accommodation, visa, and/or registration fees*) and is provided up to specified caps which are normally as follows:
– up to €400 for participants travelling to an EMBL Course, EMBL Conference or EMBO|EMBL Symposium from within Europe.
– up to €1000 for participants travelling to an EMBL Course, EMBL Conference or EMBO|EMBL Symposium from outside Europe.
– up to €500 for any participant travelling to an EMBO Practical Course or EMBO Workshop.
– up to €1000 for any participant working in Chile, India, Singapore or Taiwan travelling to an EMBO Practical Course or EMBO Workshop.
*Registration fees are only covered for EMBO Practical Courses or EMBO Workshops
The organisers may reduce the grant cap to accommodate more participants. Recipients will be notified of their travel cap amount when they are informed of the outcome of their application. Original receipts must be provided with your signature for all costs incurred within two months of completion of travel. Scanned copies cannot be accepted.
For EMBO Practical Course or EMBO Workshop participants with children, there is the possibility to apply for a childcare grant to offset child care costs incurred by participants or speakers when participating at a course or conference. Eligible costs include fees for a baby-sitter or child-care facility, travel costs for a care giver, or travel costs for taking the child to the meeting etc. Please note that priority will be given to early stage researchers. A maximum amount of 500 EUR can be awarded per participant applying for an EMBO Childcare Grant. In order to apply for this grant for EMBO Workshops, you must be registered by the abstract submission deadline.
You may apply for financial assistance when submitting your motivation letter for courses, and abstract for conferences. In your application you will be asked to answer questions regarding why your lab cannot fund your attendance and how your attendance will make a difference to your career. Application for financial support will not affect the outcome of your registration application.
For the Boehringer Ingelheim Fonds Travel Grant, there is a pre-application question during the motivation letter submission process, and if selected you will be requested to complete a standard form and documentation consisting of your travel expense estimation.
The scientific organisers will select the recipients of all financial assistance during the motivation letter or abstract selection process. Results will be announced approximately 6-8 weeks before the event start date, however for some events this may be delayed. Selection results do not impact your admission to the meeting. Selection is based on your current work or study location, the reasons for needing financial support and the impact this event will have on your career.
Costs will be reimbursed after the meeting only once a reimbursement form and original receipts (from travel costs) have been received.
View our list of external funding opportunities and information on attending a conference as an event reporter.
For further information about financial assistance please refer to the FAQ page.
Accommodation in twin rooms, including breakfast, is included in the registration fee. Accommodation has been booked for you at the ISG Hotel for the default dates of 18 to 26 (8 nights). In case you would like to have a single room, please let the hotel know and please note that you will be required to pay an additional cost of 32€ per night (availability of single rooms may be limited). This should be paid by you directly to the ISG during your stay. Any additional nights need to be booked and paid for by you. We recommend that all course participants stay at the ISG Hotel which is the dedicated hotel for the course.
For travel information, please see here.
If you are travelling to the conference within Germany then you are eligible for the Deutsche Bahn ‘Event Ticket’ (called the ‘Veranstaltungsticket’ in German). This will result in a lower ticket price if your travel distance to Heidelberg is more than 100 km. You need to provide proof of your event attendance when purchasing the ticket.
For more information in English see here or in German see here.
You can book your ticket here.
Shuttle buses will go from the ISG Hotel to EMBL and back, mornings and evenings. A bus schedule and location of the bus stops will be made available prior to the meeting.
Address: EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany
For more information about accommodation and travel, please refer to the FAQ page.
All meals and coffee breaks are included in the registration fee. Our catering staff will prepare a wide variety of vegetarian meals, meat and fish dishes, soups, pasta, fresh fruit and vegetables, as well as a variety of desserts.
Please wear your badge at all times when serving yourself.
No food or drinks are allowed in the laboratories.
In most places the electricity is 220 volts AC (50 cycles). An adaptor and a plug that fits the German socket may be needed for your appliances/laptop (i.e. American, Japanese, etc.). A USB charging station for electronic devices is available at the registration desk.
If you are interested in purchasing EMBL merchandise (products presented in the glass display in the registration area), please email the EMBL shop to place an order or get in contact with your Course Organiser.
Kindly note the EMBL shop is only open upon request and all purchases must be made in cash (Euros only).
Please read EMBL’s COVID-19 safety policy for on-site events.
Do not smoke in any EMBL building.
Eating and drinking is prohibited in all laboratories.
Do not enter any restricted areas or the laboratories unless instructed to do so.
If first aid is required …
In case of fire …
Beyond first aid…
Please remember to bring your own medication, if needed, to the conference. Note that the next pharmacy is a 4-minute drive from the EMBL, but for many medications you will be required to see a doctor to get a prescription.
Ensure in advance that your medical insurance will cover you during your visit in the event that you do need to see a doctor while in Heidelberg. In any case, the EMBL Course and Conference Office will assist you to get to the pharmacy and a doctor of your choice if necessary.
Wi-Fi is available on campus. Log in using the EMBL-Events network and the event specific password, which will be provided on site. The eduroam network (secure, worldwide roaming access service developed for the international research and education community) is also available.
‘’Lost and Found’’ items are kept at the registration desk until the end of the conference.
There are lockers available on-site to store your luggage, which require a 2 EURO coin to operate. There is another luggage room on level E0, which is free to use but remains unlocked during the conference.
There is a nursing room available in the ATC Rooftop Lounge on level A29.
During the conference, an EMBL Photographer may be taking photos. If you would not like to appear in these, please inform the photographer or a member of the Course and Conference Office.
We can help to print your boarding pass/train ticket. Please send it to events@embl.de and collect your print-outs at the registration desk.
There is a room for prayer, meditation, and yoga located on level E0 behind the Auditorium. Please be respectful of others using the room.
A variety of activities in Heidelberg can be found on the website of Heidelberg Marketing.
During the event, we provide conference shuttle buses to and from EMBL. In addition, there is the public bus 39A that serves the EMBL campus and taxis can be easily booked at any time. Information on the shuttle buses can be found on the individual event website and more detailed information on travelling to EMBL can be found on our Travel Information page.
Address: EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany
Please find additional information including FAQs, terms and conditions, COVID-19
The EMBL eCampus learning platform will be used to collaborate, communicate and network with all of the course participants. All participants will receive information on how to join shortly before the course. We recommend using Chrome, Safari or Mozilla Firefox browsers for eCampus.
Please find additional information including FAQs, terms and conditions, COVID-19 safety policy and travelling to EMBL on our Information for Participants page.
COVID-19 information for on-site events at EMBL Heidelberg can be found in our COVID-19 FAQs.
Media partners
Imaging and Microscopy, a Wiley magazine
Sponsorship opportunities
We offer a variety of event sponsoring possibilities, with the flexibility to select a set sponsorship package or combine individual sponsorship options to suit your event budget. Discounts are available for companies sponsoring multiple events at EMBL Heidelberg. View other conferences, or contact sponsorship@embl.de for further information.
If you are interested in becoming a media partner of this event, please visit our media partnerships webpage.
Want to let others know you’re attending this event? Take a look at our shareable media and feel free to use them in your social media channels or presentations.
Date: 18 - 26 Aug 2024
Location: EMBL Heidelberg
Venue: EMBL Advanced Training Centre and EMBL Imaging Centre
Deadline(s):
Application: Closed
Organisers:
Contact: Aline Schnieder