New approaches and concepts in microbiology

Time (Europe/Berlin)	Speaker
12:00 – 13:30	Registration and Light refreshments
13:30 – 13:45	Opening remarks
13:45 – 14:45	Panel discussion: 10 years after –  future & evolution of microbiology meeting(s) at EMBL Moderator: Pascale Cossart
14:45 – 15:15	Coffee Break
15:15 – 19:00	Session 1: Systems biology Session chairs: Christian Ahrens and Jason Peters
15:15 – 15:45	Speeding up access and function of microbial natural products Helge Bode – Max Planck Institute for Terrestrial Microbiology, Germany Not available on demand
15:45 – 16:15	Unravelling metabolic heterogeneity and cross-feeding using metaproteomics and stable isotope labelling  Stephan Kamrad – University of Cambridge, UK
16:15 – 16:30	Co-seq: easy identification of single cell inherited variability unveils the co-existence of distinct phenotypes in pathogenic E. coli Raya Faigenbaum-Romm – The Hebrew University of Jerusalem, Israel Not available on demand
16:30 – 17:00	Genome-wide CRISPRi-based functional genomic analyses in model Gram positive bacteria (Terrabacteria) Carol Gross – University of California, San Francisco, USA
17:00 – 17:30	Coffee Break
17:30 – 18:00	Systematic strategies to uncover the Achilles heels of AMR Nassos Typas – EMBL Heidelberg, Germany Not available on demand
18:00 – 18:15	Multiomics profiling provides insights into niche adaptation and alternative carbon source preference in Streptococcus pneumoniae Vincent de Bakker – University of Lausanne, Switzerland
18:15 – 18:45	Runaway transcription and its genome-wide impact Gene Li – Massachusetts Institute of Technology, USA Not available on demand
18:45 – 19:00	Genetic interaction landscape of Streptococcus pneumoniae Lok-To (Chris) Sham – National University of Singapore, Singapore
19:00 – 20:30	Dinner in Canteen
20:30 – 23:00	Drinks in ATC Roof top lounge & Meet the speakers (only from 20:30-21:00) and Meet the speakers of the day and editors – Lavinia Arseni (FEBS Letters) – Achim Breiling (EMBO reports) – Ieva Gailite (EMBO) – Paula Jauregui (PLOS) – Francois Mayer (Nature) – Ruby Ponnudurai – (Review Commons) – Cesar Sanchez (Nature) – Christina Tobin-Kahrstrom (Nature)

Time (Europe/Berlin)	Speaker
09:00 – 12:30	Session 2: Cell biology and protein machineries Session chairs: Despoina Mavridou and Kai Thormann
09:00 – 09:30	Universal properties of the intrinsic microbial response to temperature fluctuations  KC Huang – Stanford University, USA
09:30 – 09:45	Live tracking of Pseudomonas aeruginosa infections in lung organoids reveals strong metabolic and biophysical fitness trade-offs Lucas Meirelles – EPFL, Switzerland Not available on demand
09:45 – 10:15	Towards a mechanistic understanding of multicellular behaviors in bacteria Tâm Mignot – CNRS-Aix Marseille University, France
10:15 – 10:30	Physiological adaptation in flagellar architecture improves bacterial chemotaxis in complex environments Marianne Grognot – RWTH Aachen, Germany; Rowland Institute at Harvard, USA
10:30 – 11:00	Coffee Break
11:00 – 11:30	Enabling discovery by in-cell structural biology  Julia Mahamid – EMBL Heidelberg, Germany
11:30 – 11:45	Multi-scale imaging of an Asgard archaeon illuminates the origin of the eukaryotic cytoskeleton Florian Wollweber – ETH Zürich, Switzerland Livestream only
11:45 – 12:15	How E. coli maintains robust cell envelope growth Waldemar Vollmer – Newcastle University, UK Not available on demand
12:15 – 12:30	Resurrecting ancestral membranes with minimal bacterial cells James Saenz – TU Dresden, Germany
12:30-14:00	Lunch
13:30-14:00	Meet the speakers of the day
14:00-15:30	Poster Session 1 (odd numbers) Please see the poster overview here.
15:30-19:00	Session 3: Regulation, signalling and transcriptional networks Session chairs: Kirsten Jung and Benjamin Ezraty
15:30 – 16:00	Structural and functional characterization of bacterial membrane microdomains Daniel Lopez – Spanish National Centre for Biotechnology (CNB), Spain
16:00 – 16:15	Robust Coherent and Synchronized Circadian Clock-Controlled Oscillations along Multicellular Filaments of Anabaena cyanobacteria Rinat Arbel-Goren – Weizmann Institute of Science, Israel Not available on demand
16:15 – 16:45	Bridging c-di-GMP signalling and biopolymer metabolism in Streptomyces Natalia Tschowri – Leibniz University Hannover, Germany
16:45 – 17:00	How a metabolic thermometer and a transcriptional feedback loop maintain a fluid membrane in Escherichia coli Greg Bokinsky – TU Delft, The Netherlands
17:00 – 17:30	Coffee Break
17:30 – 18:00	Mechanisms and Evolutionary Dynamics of Bacterial Anti-Phage Defense Systems Michael Laub – Massachusetts Institute of Technology, USA Not available on demand
18:00 – 18:15	Atlas of mRNA translation and decay for bacteria Lilit Nersisyan – Karolinska Institutet, Sweden
18:15 – 18:45	New tools for new antibiotics: Machine learning, imaging, and single-cell sequencing Zemer Gitai – Princeton University, USA
18:45 – 19:00	High throughput expression analysis reveals evolution of key virulence pathways in Mtb Peter Culviner – Harvard School of Public Health, USA Not available on demand
19:00 – 20:30	Dinner in Canteen
20:30 – 22:30	Drinks in ATC Roof top lounge

Time (Europe/Berlin)	Speaker
09:00 – 12:30	Session 4: Phage-bacterial interactions Session chairs: Ditlev Brodersen and Francois Rousset
09:00 – 09:30	New mechanisms of anti-phage defense and counter defense Rotem Sorek – Weizmann Institute of Science, Israel Not available on demand
09:30 – 09:45	Genomics based predictions of phage bacteria interactions at the species level Aude Bernheim – Pasteur Institute, France
09:45 – 10:00	A multitude of diverse anti-retron proteins in phages Jacob Bobonis – EMBL Heidelberg, Germany
10:00 – 10:30	Luciano Marraffini – The Rockefeller University, USA
10:30 – 11:00	Coffee Break
11:00 – 11:15	Bacteriophages use noncontiguous operons to avoid autoimmunity from cognate immune systems Jakob Rostøl – Imperial College London, UK
11:15 – 11:30	Identification of factors required for protein import into a bacteriophage nucleus Claire Kokontis – University of California, San Francisco, USA
11:30 – 12:00	Pseudomonas prophages exploit bacterial signaling to modulate phage receptor activity Karen Maxwell – University of Toronto, Canada
12:00 – 12:15	A discovery pipeline for prophage induction-mediated antagonism between natural Vibrio isolates Julie Chen – Broad Institute / MIT, USA
12:15 – 12:30	It’s “parasites all the way down”: Discovery and characterization of phage satellites in bacterial genomes Jorge Moura de Sousa – Institut Pasteur, France
12:30-15:30	Lunch
13:30-14:00	Meet the speakers of the day
14:00-15:30	Poster Session 2 (even numbers) Please see the poster overview here.
15:30 – 19:00	Session 5: Pathogenesis & Anti-infectives Session chairs: Alexandre Persat and Karin Strijbis
15:30 – 16:00	Unlocking antibiotic persisters during infection Sophie Helaine – Harvard Medical School, USA Not available on demand
16:00 – 16:15	The antiphage defense system CBASS controls resistance and enables killing by antifolate antibiotics in Vibrio cholerae Ana Rita Brochado – University of Würzburg, Germany Not available on demand
16:15 – 16:30	Efflux pump gene amplifications bypass necessity of multiple target mutations for resistance against dual-targeting antibiotic Anupama Khare – National Cancer Institute, USA Not available on demand
16:30 – 17:00	Vibrio parahaemolyticus is a facultative intracellular pathogen: survival, proliferation and escape from host cell Kim Orth – The University of Texas Southwestern Medical Center, USA
17:00 – 17:30	Coffee Break
17:30 – 18:00	Shigella evades pyroptosis by arginine ADP-riboxanation of caspase-11  Feng Shao – National Institute of Biological Sciences, China
18:00 – 18:15	Infection-induced membrane ruffling initiates danger and immune signalling via the mechanosensor PIEZO1 Andrea Puhar – The Laboratory for Molecular Infection Medicine Sweden (MIMS), Umeå University, Sweden
18:15 – 18:45	Interferon: tug of war between host and pathogen Charlotte Odendall – King’s College London, UK Not available on demand
18:45 – 19:00	Temporal single-cell RNA sequencing captures macrophage reprogramming by Salmonella Christoph Toussaint – Helmholtz Centre for Infection Research, Germany
19:00 – 21:00	Dinner
21:00 – 00:00	DJ and party

09:00 – 12:30	Session 6: Microbiomes & Microbial Interactions Session chairs: Lisa Maier and Caroline Taouk
09:00 – 09:30	Codiversification of humans with gut and oral microbiota and their characteristics Ruth Ley – Max Planck Institute for Developmental Biology, Germany
09:30 – 09:45	Gut bacteria wrestle with SUMO in the intestinal arena David Ribet – University of Rouen, France
09:45 – 10:15	Nicole Koropatkin
10:15 – 10:30	FISHing for more: visualising the tumour microbiome Shraddha Shitut – EMBL Heidelberg, Germany Not available on demand
10:30 – 11:00	Coffee Break
11:00 – 11:30	Assessing interpersonal differences in gut microbiota metabolism of medical drugs and organic carcinogens Michael Zimmermann – EMBL Heidelberg, Germany
11:30 – 11:45	Mechanisms of gut microbiome remodelling by dietary xenobiotics Elizabeth Culp – Yale University, USA
11:45 – 12:15	Natural Product Antibiotics: Past, Present, Future Mohammad Seyedsayamdost – Princeton University, USA
12:15 – 12:30	The marine vitamin marketplace: B vitamin auxotrophies shape particle-associated microbial communities Rachel Gregor – Massachusetts Institute of Technology, USA
12:30 – 14:00	Lunch
13:30-14:00	Meet the speakers of the day
14:00-15:00	Poster Session 3 (further networking) Please see the poster overview here.
15:00 – 17:00	Session 7: Environment & Evolution Session chairs: Jordi van Gestel and Shaul Pollak
15:00 – 15:30	Evolutionary insights to engineering microbial communities Alvaro Sanchez – Centro Nacional de Biotecnología (CNB-CSIC), Spain
15:30 – 15:45	Bridging Scales: Correlative Measurements of Mass and Metabolism in Single-Cell Microorganisms Lars Behrendt – Uppsala University, Sweden
15:45 – 16:15	Using artificial selection to optimise microbial community function  Sara Mitri – Université de Lausanne, Switzerland
16:15 – 16:30	Pre-antibiotic era plasmids reveal insights into the historical spread of antimicrobial resistance Andrian Cazares – EMBL-EBI, UK Not available on demand
16:30 – 16:40	Poster Awards and Closing Remarks
16:40-17:00	Farewell
17:00 (NEW TIMES)	Optional: Bus to Frankfurt airport (Terminal 1). Tickets may be purchased onsite for 30 EUR.
17:00	Departure

On-site registration fees include admission, conference materials, COVID-19 safety measures, meals and coffee breaks. Participants are expected to book and pay their own accommodation and travel expenses.

Virtual registration fees include access to all of the talks (livestreamed and on demand) and facility to submit questions.

On-site Academia	€700
On-site PhD Student	€600
On-site Industry	€900
Virtual Academia	€200
Virtual PhD Student	€150
Virtual Industry	€250

A letter to support your visa application will be issued, on request, once payment of the registration fee is confirmed. We recommend that you book your visa appointment as soon as possible, to avoid any delay with your visa application.

Accredited journalists may be eligible to register for complimentary press registration. Registrants may be required to provide accreditation or equivalent proof of press membership after registration. Please contact Lea Hohmann for more information.

Confirmation and payment

Registration will be on a first come, first served basis. Your place can only be confirmed after payment of the registration fee. If you are added to our waiting list, please consider taking advantage of our offerings to participate virtually.

On-site participants: Types of payments accepted are international bank transfers and credit card payments.

Virtual participants: We are only able to accept card payments. In exceptional cases we can accept bank transfers. Please contact events@embl.de for details.

Abstract submission

Only participants registering to attend the on-site event are eligible to submit an abstract. Abstracts will not be accepted from virtual participants.

After registration you can submit your abstract via a separate link that will be provided in the email confirmation. Alternatively, you can access the link on the confirmation page directly after registering. The same login credentials are used for both processes.

Please note:

Abstract body: The limit of 2000 characters refers to manually typed text and excludes spaces. If an error occurs try using a different web browser (preferably Google Chrome or Mozilla Firefox).

If you copy-paste the text into the form, hidden formatting might still be included which may cause the text to exceed the 2,000 character limit resulting in an error message. We recommend you clear all formatting before pasting in the text.

If you have special symbols in your text, make sure you are using Unicode characters, otherwise these will not be recognised.

Title: The title should not exceed 20 words. Only the first word of the title should start with a capital letter and the rest should be lowercase.

Authors and affiliations: Please fill in the author’s details as requested in the online form. The compulsory fields are: First Name, Last Name, Organisation Name (Affiliation or Company), Country and Email.

Kindly mark only one author in the role of First Author and please don’t forget to indicate who will be the Presenter.

Please enter your co-authors correctly via the system by adding accounts together with their organisation/institute. Do not copy-paste them into the body of the abstract text, as they will not be indexed in the abstract book.

Presentation types: When submitting your abstract, you can apply for an oral or poster presentation. A selection process will take place with the results announced 2-3 weeks after the abstract submission deadline.

For detailed instructions on how to submit a conference abstract, follow the instructions provided in this video.

Please check our FAQs pages for further information on how to submit an abstract.

Financial assistance

Limited financial assistance is provided by the EMBL Advanced Training Centre Corporate Partnership Programme and EMBO in the form of both registration fee waivers and travel grants. These are available for on-site participants at EMBL Conferences and EMBO|EMBL Symposia, and for on-site and virtual participants at EMBO Workshops. We are currently working on securing funding for all virtual participants, and ask that you please apply for financial assistance for both on-site and virtual participation. 

Your place in the meeting is only confirmed by paying the registration fee, which is mandatory even when receiving a fee waiver.

Registration fee waiver

The fee waiver will cover the registration sum that you have paid to attend the course or conference.

Travel grant

The travel grant will cover the cost of travel to an on-site event (airfare, train, bus, taxi, accommodation, visa, and/or registration fees*) and is provided up to specified caps which are normally as follows:

–up to €400 for participants travelling to an EMBL Conference or EMBO|EMBL Symposium from within Europe.

–up to €1000 for participants travelling to an EMBL Conference or EMBO|EMBL Symposium from outside Europe.

–up to €500 for any participant travelling to an EMBO Workshop.

–up to €1000 for any participant working in Chile, India, Singapore or Taiwan travelling to an EMBO Workshop.

–up to €700 for any participant working in Croatia, Czech Republic, Estonia, Greece, Hungary, Italy, Lithuania, Luxembourg, Poland, Slovenia, and Turkey travelling to an EMBO Workshop.

*Registration fees are only covered for EMBO Workshops

The organisers may reduce the grant cap to accommodate more participants. Recipients will be notified of their travel cap amount when they are informed of the outcome of their application. Original receipts must be provided with your signature for all costs incurred within two months of completion of travel. Scanned copies cannot be accepted.

Application

On-site participants

You may apply for financial assistance when submitting your abstract. In your application you will be asked to answer questions regarding why your lab cannot fund your attendance and how your attendance will make a difference to your career. Application for financial support will not affect the outcome of your registration application.

Virtual participants

If you are attending virtually, you can apply for financial assistance in the submission portal by the abstract deadline. Read the instructions on how to apply for financial assistance. Only submissions for financial assistance will be accepted. Presentation abstracts cannot be submitted here and will be declined. 

In your application you will be asked to summarise your current work,  answer questions regarding why your lab cannot fund your attendance, and how your attendance will make a difference to your career. Application for financial support will not affect the outcome of your registration application.

Selection

The scientific organisers will select the recipients of all financial assistance during the abstract selection process. Results will be announced approximately 6 – 8 weeks before the event start date, however for some events this may be delayed. Selection results do not impact your admission to the meeting. Selection is based on scientific merit, your current work or study location, the reasons for needing financial support, and the impact this event will have on your career.

Reimbursement

Costs will be reimbursed after the meeting only once a reimbursement form and original receipts (from travel costs) have been received.

Further details

View our list of external funding opportunities and information on attending a conference as an event reporter.

For further information about financial assistance please refer to the FAQ page.

Accommodation is not included in the conference registration fee.

As further changes in our events are possible due to COVID-19, you should book flights, trains and hotels with flexible options and favourable cancellation conditions.

The hotels below have rooms on hold for participants until 30 May 2023, in some cases at special rates. Please email the hotel directly, quoting the booking code EES23-06 to confirm the exact price of the room

Hotel Anlage	Hotel ibis Heidelberg	Staycity Aparthotel Heidelberg
Hotel Bayrischer Hof	Leonardo Hotel Heidelberg City Centre	Steffi’s Hostel Heidelberg
B&B Hotel	Hotel Monpti	Hotel Vier Jahreszeiten Heidelberg
Hotel Holländer Hof	Premier Inn Heidelberg City

Conference shuttle buses

Conference shuttle buses are free of charge for participants, and depart from designated bus stops near the hotels to EMBL and back, mornings and evenings.

The bus stops for this conference are:

• Staycity Aparthotel (Speyerer Str. 7)
• Kurfürsten-Anlage (Opposite Main Train Station)
• Premier Inn (Kurfürsten-Anlage 23)
• Leonardo Hotel Heidelberg City Center (Bergheimer Str. 63)
• Neckarmünzplatz (Heidelberg Tourist Information)
• Peterskirche (Bus stop)

View Conference shuttle bus stops and hotels in a larger map.

Final bus schedule: HERE (please note that the buses on the last day will leave now at 17:00 instead of 17:30 & 17:45) – Updated 16 June

Further details

Address: EMBL, Meyerhofstraße 1, 69117 Heidelberg, Germany. For further information on getting to EMBL Heidelberg visit Public Transportation to the Venue. For information about accommodation and local transportation please refer to the FAQ page.

Catering

All meals and coffee breaks are included in the registration fee. Our catering staff will prepare a wide variety of vegetarian meals, meat and fish dishes, soups, pasta, fresh fruit and vegetables, as well as a variety of desserts.

Please wear your badge at all times when serving yourself.

No food or drinks are allowed in the auditorium.

Charging lockers

There are lockers available next to the stairs leading down into the Auditorium. You will find some of those equipped with sockets to charge your smartphone/tablet etc.

Electricity and charging station

In most places the electricity is 220 volts AC (50 cycles). An adaptor and a plug that fits the German socket may be needed for your appliances/laptop (i.e. American, Japanese, etc.). A USB charging station for electronic devices is available at the registration desk.

EMBL merchandise

If you are interested in purchasing an EMBL souvenir (products presented in the glass display in the registration area), please ask at the registration desk for more information.

Health and safety notes

Please read EMBL’s COVID-19 safety policy for on-site events.
Do not smoke in any EMBL building.
Eating and drinking is prohibited in the Auditorium and all laboratories.
Do not enter any restricted areas or the laboratories unless instructed to do so.

If first aid is required …

• The first aid room is located next to the ATC Registration Desk (room 10- 205).
• Dial the Emergency number 222 from any EMBL internal phone only.
• Where is the accident? What happened? How many injured?
• Emergency number 06221-387 7821 from mobile phones.
• Please report all accidents to the conference officer at the registration desk.

In case of fire …

• Press the nearest fire alarm button or the Emergency number 222 from any internal phone.
• A loud fire alarm will go off if an evacuation is required. On hearing the alarm leave the building immediately following the escape route and fire wardens and head to one of the meeting points
• Do not use the lifts.

Beyond first aid…

Please remember to bring your own medication, if needed, to the conference. Note that the next pharmacy is a 4-minute drive from the EMBL, but for many medications you will be required to see a doctor to get a prescription.

Ensure in advance that your medical insurance will cover you during your visit in the event that you do need to see a doctor while in Heidelberg. In any case, the EMBL Course and Conference Office will assist you to get to the pharmacy and a doctor of your choice if necessary.

Internet

Wi-Fi is available everywhere on the premises (no password required), just log on to ATC-Guest. The eduroam network (secure, world-wide roaming access service developed for the international research and education community) is also available.

Lost and found

‘’Lost and Found’’ are kept at the registration desk until the end of the conference.

Luggage

There are lockers available on-site to store your luggage, which require a 2 EURO coin to operate. There is another luggage room on level E0, which is free to use but remains unlocked during the conference.

Nursing room

There is a nursing room available in the ATC Rooftop Lounge on level A29.

Photography

During the conference an EMBL Photographer may be taking photographs. If you would not like to appear in these, please inform the photographer or a member of the Course and Conference Office.

Printing

We can help printing your boarding passes/train ticket. Please send it to events@embl.de and collect your print-outs at the registration desk.

Room for prayer, yoga and meditation

There is a room for prayer, mediation and yoga located on level E0 behind the Auditorium. Please be respectful of other participants using the room.

Sightseeing

A variety of activities in Heidelberg can be found on the website of Heidelberg Marketing.

Travel to and from the venue

During the event we provide conference shuttle buses to and from EMBL. In addition, there is the public bus 39A that serves the EMBL campus and taxis can be easily booked at any time. Information on the conference shuttle buses can be found on the individual event website and more detailed information on travelling to EMBL can be found on our Travel Information page.

Useful German expressions

Hello	Hallo
Goodbye	Auf Wiedersehen
Good morning	Guten Morgen
Good afternoon	Guten Tag
Good evening	Guten Abend
Good night	Gute Nacht
I’m sorry	Tut mir leid
Excuse me…	Entschuldigen Sie
How are you?	Wie gehts?
I’m fine thanks. And you?	Mir geht es gut , danke, und dir/Ihnen?
What is your name	Wie heisst du? Wie heissen Sie?
My name is	Ich heisse
Do you speak English	Sprechen Sie Englisch?
I don’t understand	Ich verstehe nicht
Please speak more slowly	Können Sie bitte langsamer sprechen
Thank you	Dankeschön
Where is the toilet?	Wo ist die Toilette?
Please call me a taxi	Bitte rufen Sie mir ein Taxi
How do I get to….?	Wie komme ich zum/zur…..?
A beer/two beers please	Ein Bier/zwei Bier bitte
A glass of red/white wine please	Ein Glas Rot/Weisswein bitte
The menu, please	Die Speisekarte, bitte
Is there a local speciality?	Gibt es eine Spezialität aus dieser Gegend?
I’m Vegetarian	Ich bin Vegetarier
It was delicious	Es war hervorragend
The bill, please	Die Rechnung, bitte
I have a headache	Ich habe Kopfschmerzen
I have a sore throat	Ich habe Halsschmerzen
My stomach hurts	Ich habe Magenschmerzen
I’m allergic to	Ich bin allergisch gegen
I need a doctor who speaks English	Gibt es einen Arzt, der Englisch spricht?

What’s included?

• Access to all the livestreamed talks
• Video library of the recorded talks during and after the event
• Facility to submit questions

Please note that only on-site participants are able to submit abstracts and participate in the poster sessions.

Event platform

We are using an event platform for this conference. More information about the platform will be shared ahead of the conference.

Guidelines

• Do not broadcast the conference to unregistered participants.
• You are encouraged to tweet and post about the event. Tweet unless the speaker specifically says otherwise, but be mindful of unpublished data. 
• Please do not capture, transmit or redistribute data presented at the meeting.

Additional information can be found in our Code of Conduct.

Health and well-being

It is important to stay healthy and move around, especially when you are attending an event virtually. We have put together a few coffee break stretches and yoga videos in the conference platform for you to enjoy during the event.

How to ask questions

Please use the Q&A function in the event platform.

If you have any other questions, you can go to the Help Desk in the event platform. Click on ‘more’ on the top menu and click Help Desk. 

Time zone

The programme is planned based on the Europe/Berlin time zone, unless otherwise stated. Please take your time zone into consideration when planning your attendance.

Please find additional information including FAQs, terms and conditions, COVID-19 safety policy and travelling to EMBL on our Information for Participants page.

COVID-19 information for onsite events at EMBL Heidelberg can be found in our COVID-19 FAQs.