Edit
Metabolite and species dynamics in microbial communities – Course and Conference Office

EMBO Practical Course

Metabolite and species dynamics in microbial communities

Overview

This is a two-hub course taking place in parallel at both EMBL Heidelberg, Germany and the Bangalore Life Science Cluster (BLiSC) Campus in Bangalore, India. Applicants can apply for either location and are encouraged to apply for the one that is closest to them.

Course overview

Metagenomics studies are rapidly uncovering the compositional richness of microbial communities in diverse habitats ranging from the oceans to the human gut. While their fundamental role in our health and environment is undeniable, there is an urgent need for unravelling molecular mechanisms underlying the dynamics of these communities. This requires a combined experimental and computational approach. Recent studies (including those from the organisers’ and speakers’ labs) have underlined the success of such integrative approaches. For example, emergence of cell subpopulations (Varahan et al. eLife 2019, 2020), and long-term stability (Blasche, Kim et al. Nat Microbiol. 2021) through metabolic cross-feeding.

As researchers world-wide map species dynamics in the ecosystems of their interest, this course will provide the necessary overview and tools for moving from cataloguing to identifying key interaction agents, especially metabolites. This will include integrating species and metabolite dynamics data, as well as leveraging the power of genome-scale metabolic models to predict community interactions.

Audience

This course is aimed at PhD students and post-doctoral researchers who would apply the methods covered in the course. Applicants are requested to send a motivation letter summarizing their current research and their need for the methods addressed in this course. Furthermore, there is a specific questionnaire to query the background and access to the relevant methods. We aim for a broad geographical distribution of participants to identify needs for applying the methods in different countries, this includes newer EU member states. To ensure optimal tutoring during the practicals, we
target for 20 participants (10 each site). The course will bring together participants from various disciplines (microbiology, metabolomics, modelling, ecology) and ensure a distribution on both sites.

Modules/Resources

  • Experimental design and kefir culture set-up and sampling
  • 16S analysis of kefir communities using Nanopore sequencing technology
  • Metabolite changes during kefir fermentation using Metabolomics
  • Interaction mapping plating experiment
  • Computational analysis introduction using R-studio/Python
  • 16S and metabolomics data analysis (computational)
  • Metabolic modelling of community interactions (computational)

Learning outcomes

The main goal of the course is to equip the participants with the state-of-the-art concepts in microbial ecosystems and introduce them to the key tools towards gaining mechanistic insights in community dynamics. The central learning objective is that the participants will be able to apply these concepts and tools in their own research. Further, we also aim at enabling scientific networking among the participants (including speakers and trainers) and foster dialogue between scientists from different areas (microbiology, metabolomics, modelling, ecology).

What past participants say about the course

“The two hub course organised by EMBL was a great success where participants like me not only learnt wet lab techniques like LC-MS but also learnt data visualisation using R and python which will be a great help while analysing our own data.” – Nidhi Yadav, ICGEB, New Delhi, India

“This EMBO course was very well-organised and provided me essential tools and new approaches that I will apply in my research to study metabolic interactions within microbial communities. The combination of wet- and dry-lab techniques, as well as the involvement of two hubs in Germany and India, made the course very complete and enriching.” – Laura Camus, IMIT – University of Tübingen, Germany


This event has been granted the following EMBO sustainability badge:

Grade 2 of 3

Speakers

Speakers, trainers, and staff

Deepa Agashe

National Centre for Biological Sciences

India

Course hub: Bangalore

Renato Alves

EMBL Heidelberg

Germany

Course hub: Heidelberg

Simran Aulakh

University of Cambridge

United Kingdom

Course hub: Bangalore

Sonja Blasche

University of Cambridge

United Kingdom

Course hub: Bangalore

Amrita Hazra

Indian Institute of Science Education and Research, Pune

India

Course hub: Bangalore

Ece Kartal

University of Heidelberg

Germany

Course hub: Heidelberg

Christian Kost

University of Osnabrueck

Germany

Course hub: Heidelberg

Sunil Laxman

Institute for Stem Cell Biology and Regenerative Medicine

India

Course hub: Bangalore

Daniel Machado

Norwegian University of Science and Technology

Norway

Virtual speaker

Nitish Malhotra

University of California, Irvine

USA

Course hub: Bangalore

Ganesh Muthu

Institute for Stem Cell Science and Regenerative Medicine

India

Course hub: Bangalore

Niranjan Nagarajan

Genome Institute of Singapore, A*STAR & National University of Singapore

Singapore

Course hub: Bangalore

Sreesa Sreedharan

Institute for Stem Cell Science and Regenerative Medicine

India

Course hub: Bangalore

Scientific organisers

Sunil Laxman

Institute for Stem Cell Biology and Regenerative Medicine

India

Course hub: Bangalore

Kiran Patil

University of Cambridge

United Kingdom

Course hub: Heidelberg

Course organisers

Irena Provaznikova

Scientifc Training Manager

EMBL Heidelberg

Germany

Course hub: Heidelberg

Nathalie Sneider

Course and Conference Manager

EMBL Heidelberg

Germany

Course hub: Heidelberg

Programme

Are you on social media? Post using #EMBOMicroCom and don’t forget to tag @EMBLEvents

Day 0 – Monday 30 September 2024
Time
Europe/Berlin
SpeakerTime
India/Bangalore
10:00 – 10:30On-Boarding Day: Welcome and short introduction13:30 – 14:00
10:30 – 11:00Course overview on eCampus /introduction to pre-course work14:00 – 14:30
11:00 – 11:30Software test for pre-course work14:30 – 15:00
11:30 – 12:00Speed networking between cross-site participants15:00 – 15:30
Day 1 – Sunday 13 October 2024
Time
Europe/Berlin
SpeakerTime
India/Bangalore
Zoom link for the day shared in eCampus
11:20Heidelberg hub:
 Shuttle from ISG Hotel to EMBL
– Light lunch upon arrival at EMBL
11:30 – 12:00Heidelberg hub and Bangalore hub: registration and technical set-up15:00 – 15:30
12:00 – 12:15Welcome and house notes (shared via Zoom) at both sites – joint

Treasure hunt challenge introduced.
15:30 – 15:45
12:15 – 12:45Course overview (Introduction to format, expectations, timelines)
Sonja Blasche – University of Cambridge, UK
Maria Zimmermann – EMBL Heidelberg, Germany
15:45 – 16:15
12:45 – 14:15Flash Talks by participants, organisers, trainers, speakers (concurrent coffee break)16:15 – 17:45
14:15 – 15:15Lecture 1: The leaf microbiota: disassembling and rebuilding to explore plant microbe interactions
Julia Vorholt – ETH Zurich, Switzerland
17:45 – 18:45
15:15 – 15:30Coffee break18:45 – 19:00
15:30 – 16:15Practical session 1: Kefir culture inoculation
Heidelberg hub trainers:
Matthias Gross – EMBL Heidelberg, Germany
Denise Selegato – EMBL Heidelberg, Germany

Bangalore trainers:
Simran Aulakh – University of Cambridge, UK
Sonja Blasche – University of Cambridge, UK
Ganesh Muthu – Institute for Stem Cell Science and Regenerative Medicine, India
Sreesa Sreedharan – Institute for Stem Cell Science and Regenerative Medicine, India
Rajalakshmi Srinivasan – Institute of Bioinformatics and Applied Biotechnology, India
19:00 – 19:45
Bangalore hub: Dinner followed by networking19:45 – 21:15
16:15 – 17:30Heidelberg hub: Challenges and Expectations followed by networking time
Kiran Patil – University of Cambridge, UK
Elisabeth Zielonka – EMBL Heidelberg, Germany
Maria Zimmermann – EMBL Heidelberg, Germany
17:30 – 17:45Heidelberg hub: Bus from EMBL to the ISG Hotel
18:00 – 20:00Heidelberg hub: Dinner at the ISG Hotel followed by networking
Day 2 – Monday 14 October 2024
Time
Europe/Berlin
SpeakerTime
India/Bangalore
Zoom link for the day shared in eCampus
Bangalore hub: Overview of the day
Nitish Malhotra – University of California, Irvine, USA
09:00 – 9:15
Bangalore hub: Networking: Challenges and expectations
Sonja Blasche – University of Cambridge, UK
Nitish Malhotra – University of California, Irvine, USA
09:15 – 10:15
Bangalore hub: Coffee break10:15 – 10:30
Bangalore hub:
Practical session 1: Experimental design and kefir culture set-up and sampling

Trainers:
Sonja Blasche – University of Cambridge, UK
Ganesh Muthu – Institute for Stem Cell Science and Regenerative Medicine, India
Sreesa Sreedharan – Institute for Stem Cell Science and Regenerative Medicine, India
10:30 – 11:30
Bangalore hub:
Practical session 4: Interaction mapping plating experiment
: inoculate background plates
Trainers:
Simran Aulakh – University of Cambridge, UK
Sonja Blasche – University of Cambridge, UK
Pratibha Sanjenbam – National Center For Biological Sciences, India
11:30 – 12:30
Bangalore hub: Lunch12:30 – 13:30
08:40Heidelberg hub: Bus from ISG Hotel to EMBL
08:55 – 09:00Heidelberg hub: Overview of the day
Matthias Gross – EMBL Heidelberg, Germany
Denise Selegato – EMBL Heidelberg, Germany
09:00 – 10:00Heidelberg hub:
Practical session 1: Experimental design and kefir culture set-up and sampling
Trainers:
Matthias Gross – EMBL Heidelberg, Germany
Denise Selegato – EMBL Heidelberg, Germany
10:00 – 11:00Lecture 2: Inter-species interactions in the insect gut
Deepa Agashe – National Center For Biological Sciences, India
13:30 –
14:30
11:00 – 11:15Coffee break14:30 – 14:45
11:15 – 12:15Lecture 3: Probing the role of microbial communities in human health with genomic tools
Niranjan Nagarajan – Agency for Science,
Technology and Research (A*STAR), Singapore
14:45 – 15:45
12:15 – 12:45Heidelberg hub:
Practical session 4: Interaction mapping plating experimentprepare plating experiment: inoculate background plates
Trainers:
Matthias Gross – EMBL Heidelberg, Germany
Denise Selegato – EMBL Heidelberg, Germany
12:45 – 13:45Heidelberg hub: Lunch
Bangalore hub:
Practical session 1 continued: Experimental design and kefir culture set-up and sampling

Trainers:
Sreesa Sreedharan, Ganesh Muthu – Institute for Stem Cell Science and Regenerative Medicine, India
Pratibha Sanjenbam – National Center For Biological Sciences
15:45 – 16:45
Bangalore hub:
Practical session 4 continued: Interaction mapping plating experiment
array species plate and pin
Trainers:
Trainers:
Simran Aulakh – University of Cambridge, UK
Sonja Blasche – University of Cambridge, UK
Pratibha Sanjenbam – National Center For Biological Sciences, India
16:45 – 18:00
13:45 – 14:30Heidelberg hub:
Practical session 1 continued: Experimental design and kefir culture set-up and sampling
Trainers:
Matthias Gross – EMBL Heidelberg, Germany
Denise Selegato – EMBL Heidelberg, Germany
14:30 – 15:00Coffee break and cross-site interaction via Zoom in small groups (grouped on topics, challenges from projects)18:00 – 18:30
15:00 – 16:00Group work: the 4 cross-site teams will discuss their practicals18:30 – 19:30
Bangalore hub dinner19:30 – 20:45
16:00 – 16:30Heidelberg hub: coffee break
16:30 – 17:45Heidelberg hub:
Practical session 4 continued: Interaction mapping plating experimentarray species plate and pin
Trainers:
Matthias Gross – EMBL Heidelberg, Germany
Denise Selegato – EMBL Heidelberg, Germany
17:45 – 19:15Heidelberg hub – Pizza dinner
19:15Heidelberg hub: Bus from EMBL to the ISG Hotel
Day 3 – Tuesday 15 October 2024
Time
Europe/Berlin
SpeakerTime
India/Banglore
Zoom link for the day shared in eCampus
Bangalore hub: Overview of the day by Rajalakshmi Srinivasan – Institute of Bioinformatics and Applied Biotechnology, India09:00 – 09:15
16S analysis of kefir communities using Nanopore sequencing technology
Bangalore hub:
Practical session 2: DNA Extraction, Normalization, Quantification
Trainers:
Simran Aulakh – University of Cambridge, UK
Sonja Blasche – University of Cambridge, UK
Rajalakshmi Srinivasan – Institute for Stem Cell Science and Regenerative Medicine, India

With flexible coffee break during session
09:15 – 12:45
08:40Heidelberg hub: Bus from ISG Hotel to EMBL
09:00 – 09:15Heidelberg hub: overview of the day
Matthias Gross – EMBL Heidelberg, Germany
Laura Villacorta – EMBL Heidelberg, Germany
09:15 – 12:4516S analysis of kefir communities using Nanopore sequencing technology
Heidelberg hub:
Practical session 2: DNA Extraction, Normalization, Quantification

Trainers:
Matthias Gross – EMBL Heidelberg, Germany
Laura Villacorta – EMBL Heidelberg, Germany
Daphne Welter – EMBL Heidelberg, Germany
Bangalore hub: lunch12:45 – 13:45
Bangalore hub:
Practical sessions 2: 16S analysis

Trainers:
Simran Aulakh – University of Cambridge, UK
Sonja Blasche – University of Cambridge, UK
Rajalakshmi Srinivasan – Institute for Stem Cell Science and Regenerative Medicine, India
Sequencing facility led by Dr. Awadhesh Pandit

Metabolomics (LC-MS)
Trainers:
Ganesh Muthu – Institute for Stem Cell Science and Regenerative Medicine, India
Sreesa Sreedharan – Institute for Stem Cell Science and Regenerative Medicine, India
13:45 – 15:45
Bangalore hub: Coffee break15:45 – 16:00
12:45 – 13:45Heidelberg hub: Lunch break
Bangalore hub:
Practical sessions 2: 16S analysis

Trainers:
Simran Aulakh – University of Cambridge, UK
Sonja Blasche – University of Cambridge, UK
Rajalakshmi Srinivasan – Institute for Stem
Cell Science and Regenerative Medicine, India

Practical session 3: Metabolomics (LC-MS)
Trainers:
Ganesh Muthu – Institute for Stem Cell Science and Regenerative Medicine, India
Sreesa Sreedharan – Institute for Stem Cell Science and Regenerative Medicine, India
16:00 – 17:30
13:45 – 14:45Heidelberg hub:
Practical session 4 continued: Interaction mapping plating experiment – image analysis
Matthias Gross – EMBL Heidelberg, Germany
Denise Selegato – EMBL Heidelberg, Germany

With flexible coffee break during session
14:45 – 16:45Heidelberg hub:
Practical sessions 2+3: 16S analysis + GeneCore tour
Trainers:
Jan Provaznik – EMBL Heidelberg, Germany
Laura Villacorta – EMBL Heidelberg, Germany
Daphne Welter – EMBL Heidelberg, Germany

Metabolomics (sample extraction, derivatization, GCMS injection)
Trainers:
Denise Selegato – EMBL Heidelberg, Germany
Maria Zimmermann – EMBL Heidelberg, Germany
Bangalore hub: free time17:30 – 19:00
Bangalore hub: dinner19:00 – 20:30
Bangalore hub: end of Day 320:30
16:45 – 17:00Heidelberg hub: coffee break
17:00 – 19:00Heidelberg hub
Practical sessions 2+3: 16S analysis + GeneCore tour
Trainers:
Jan Provaznik – EMBL Heidelberg, Germany
Laura Villacorta – EMBL Heidelberg, Germany
Daphne Welter – EMBL Heidelberg, Germany

Metabolomics (sample extraction, derivatization, GCMS injection)
Trainers:
Denise Selegato – EMBL Heidelberg, Germany
Maria Zimmermann – EMBL Heidelberg, Germany
Bangalore hub: dinner followed by networking and drinks18:00 – 19:30
19:00 – 20:00Heidelberg hub: vegetarian dinner followed by networking and drinks
20:00Heidelberg hub: Bus from EMBL to the ISG Hotel
Day 4 – Wednesday 16 October 2024
Time
Europe/Berlin
SpeakerTime
India/Banglore
Zoom link for the day shared in eCampus
Bangalore hub:
Outing including hike
07:00 – 12:00
Bangalore hub: Lunch12:00 – 13:00
09:15Heidelberg hub: Bus from ISG Hotel to EMBL
09:25 – 09:30Heidelberg hub: Overview of the day
Maria Zimmermann – EMBL Heidelberg, Germany
09:30 – 10:15Lecture 4: Probing interactions in cell populations with metabolomics
Sunil Laxman – Institute for Stem Cell Biology and Regenerative Medicine, India

30 minute talk following by 15 minute discussion
13:00 – 13:45
10:15 – 11:00Lecture 5: Experimentally dissecting metabolic interactions within microbial communities
Christian Kost – University of Osnabrück, Germany

30 minute talk following by 15 minute discussion
13:45 – 14:30
11:00 – 11:30Heidelberg and Bangalore hubs connected via Zoom and continue discussions

With flexible coffee break
14:30 – 15:00
11:30 – 12:15Lecture: 6 Investigating structure and ecology of microbial communities with
metagenomics taxonomic profiling

Georg Zeller – EMBL Heidelberg, Germany
(remote lecture)

30 minute talk following by 15 minute discussion
15:00 – 15:45
12:15 – 13:00Heidelberg hub: Lunch
13:00 – 13:15Heidelberg hub: group photo (meet at ATC entrance)
Bangalore hub: Coffee break15:45 – 16:00
Bangalore hub:
Practical session 4 continued: Interaction mapping plating experiment
– image acquistion
Trainers:
Simran Aulakh – University of Cambridge, UK
Sonja Blasche – University of Cambridge, UK
16:00 – 16:45
13:15 – 14:00Lecture 7: Towards understanding microbial community dynamics: Developing model systems in food
Emily Putnam – Middlebury College, USA

30 minute talk following by 15 minute discussion
16:45 – 17:30
14:00 – 15:30Computational Practical 5: 16S data analysis
Main trainers:
Nitish Malhotra – National Center For Biological Sciences, India
Zachariah Henseler – EMBL Heidelberg, Germany

Bangalore trainers:
Akshara Dubey – National Center For Biological Sciences, India
Ganesh Muthu – Institute for Stem Cell Science and Regenerative Medicine, India

Heidelberg trainers:
Bartosz Jan Bartmanski – EMBL Heidelberg, Germany
Fabian Springer – EMBL Heidelberg, Germany
Maria Zimmermann – EMBL Heidelberg, Germany
17:30 – 19:00
15:30 – 16:00Heidelberg hub: Coffee break
Bangalore hub: Dinner followed by casual networking19:00 – 20:30
16:00 – 18:00Heidelberg hub:
Computational Practical 6: Metabolomics data analysis
Zachariah Henseler – EMBL Heidelberg, Germany
Denise Selegato – EMBL Heidelberg, Germany
Maria Zimmerman – EMBL Heidelberg, Germany
18:00Heidelberg hub: bus to ISG (bus will stop briefly then return to EMBL)
18:20Heidelberg hub: EMBL to downtown
18:40 – 19:40Heidelberg Old Town city tour
20:00 – 22:00Heidelberg downtown dinner and networking
Day 5 – Thursday 17 October 2024
Time
Europe/Berlin
SpeakerTime
India/Bangalore
Zoom link for the day shared in eCampus
Bangalore hub: Overview of the day
Ganesh Muthu – Institute for Stem Cell Science and Regenerative Medicine, India
08:45 – 09:00
Bangalore hub:
Computational practical 6: Metabolomics data analysis
Trainers:
Sunil Laxman – Institute for Stem Cell Biology and Regenerative Medicine, Bangalore, India
Nitish Malhotra – National Centre for Biological Sciences, India
Sreesa Sreedharan – Institute for Stem Cell Science and Regenerative Medicine, India
09:00 – 11:00
Bangalore hub: Group photo and coffee break11:00 – 11:15
Bangalore hub: Treasure hunt11:15 – 12:00
Bangalore hub: Lunch12:00 – 13:00
09:00Heidelberg hub: Bus from ISG Hotel to EMBL
09:15 – 09:30Heidelberg hub: Overview of the day
Kiran Patil – University of Cambridge, UK Maria Zimmermann – EMBL Heidelberg, Germany
09:30 – 10:15Lecture 8: Chemical biology of microbes
Amrita Hazra – Indian Institute of Science Education and Research, Pune

30 minute talk following by 15 minute discussion
13:00 – 13:45
10:15 – 11:00Lecture 9: Modelling microbial community interactions
Kiran Patil – University of Cambridge, UK

30 minute talk following by 15 minute discussion
13:45 – 14:30
11:00 – 11:30Moderated discussion on responsible
conduct of research in computational analysis)

(whole group discussion followed by breakout groups)
Computational trainers and Renato Alves – EMBL Heideberg, Germany
14:30 – 15:00
11:30 – 13:00Computational Practical 7: Metabolic modelling of community interactions
Main trainers:
Kiran Patil – University of Cambridge, UK
Francisco Zorrilla – University of Cambridge, UK
Zachariah Henseler – EMBL Heidelberg, Germany
Maria Zimmermann – EMBL Heidelberg, Germany
15:00 – 16:30
13:00 – 14:00Heidelberg hub: Lunch
Bangalore coffee break16:30 – 16:45
Bangalore hub:
Practical: Interaction mapping plating experiment
image analysis
Trainers:
Simran Aulakh – University of Cambridge, UK
Sonja Blasche – University of Cambridge, UK
16:45 – 17:30
14:00 – 15:45Computational Practical 7: Metabolic modelling of community interactions
Main trainers:
Kiran Patil – Universtiy of Cambridge, UK
Zachariah Henseler – EMBL Heidelberg, Germany
Francisco Zorrilla – Universtiy of Cambridge, UK
Nitish Malhotra – National Center for Biological Studies, India
Maria Zimmermann, – EMBL Heidelberg, Germany
17:30 – 19:15
15:45 – 16:15Coffee break and chance to interact cross sites19:15 – 19:45
16:15 – 17:00Heidelberg hub:
Practical session 4 : Interaction mapping plating experiment – image aquisition
Matthias Gross – EMBL Heidelberg, Germany
Denise Selegato – EMBL Heidelberg, Germany
17:00 – 18:00Heidelberg hub: EMBL campus treasure hunt
Bangalore hub: Dinner followed by networking

End of Day 5
19:45 – 21:15
18:00 – 19:00Heidelberg hub: Tapas dinner followed by networking
19:00Heidelberg hub: Bus from EMBL to the ISG Hotel

End of Day 5
Day 6 – Friday 18 October 2024
Time
Europe/Berlin
SpeakerTime
India/Bangalore
Zoom link for the day shared in eCampus
Bangalore hub: Core facility tours09:00 – 10:15
Bangalore hub: Coffee break10:15 – 10:30
Bangalore hub: Practical presentation preparation time10:30 – 11:30
07:50Heidelberg hub: Bus from ISG Hotel to EMBL
08:00 – 09:00Cross site – preparation time in teams for practical presentations11:30 – 12:30
Bangalore hub: Lunch break12:30 – 13:30
09:00 – 10:00Heidelberg hub: Group work and facility tours continued
10:00 – 11:45Cross site team presentations

10 minute presentation + 10 minute discussion per team
13:30 – 15:15
11:45 – 12:45Bangalore hub: coffee break
Heidelberg hub: Lunch
Opportunity to network on specific topics
15:15 – 16:15
12:45 – 13:45Lecture 10: Modeling microbial ecosystems in time and space
Katharine Coyte
(remote talk)
16:15 – 17:15
13:45 – 14:30Discussion round on responsible conduct of research
All trainers and organisers
Renato Alves – EMBL Heidelberg, Germany (pre-course reading material from Renatao will be made available in eCampus)
Sabuj Bhattacharya – Institute for Stem Cell Biology and Regenerative Medicine, Bangalore, India
17:15 – 18:00
14:30 – 15:00Joint summary (take home messages, principles of responsible conduct of research) and closing remarks, treasure hunt challenge results18:00 – 18:30
Bangalore hub: Course dinner (impressions shared via eCampus)

End of course
18:30 – 20:00
15:15Heidelberg hub: Bus from EMBL to downtown Heidelberg for free time in the city
18:30Heidelberg hub: Bus from downtown (Neckarmuenzplatz) to ISG Hotel
19:00Heidelberg hub: Final evening dinner at the ISG Hotel

End of course

Practical information

Registration fees and motivation letter

The course is limited to 20 participants. For selection purposes, please note that your application will not be considered without a letter of motivation.

Registration

Registration fees include admission, course materials, meals and coffee breaks.
This EMBO course includes accommodation and transportation.

EMBL Heidelberg
site (Germany)
Bangalore Life Science
Cluster campus site (India)
Academia€500€150
PhD Student€500€150
Industry€500€150

A letter to support your visa application will be issued, on request, once payment of the registration fee is confirmed. We recommend that you book your visa appointment as soon as possible, to avoid any delay with your visa application.

Confirmation and payment

The registration fee should be paid only after acceptance to the course. The results will be announced approximately 2-3 weeks after the application deadline.

Motivation letter submission

After you have logged in and successfully registered, you will receive an email asking you to submit your motivation letter. Click on the link provided and enter your motivation letter in the text box provided. Alternatively you can submit your motivation letter by clicking on the link on the confirmation page directly after registering.

Instructions

  1. Include your relevant skills, experience and qualifications showing why you would be suitable for the course.
  2. Explain why you would like to attend, including what you can contribute and how you think you will benefit from the course.

Please note:

  • The limit of 2000 characters refers to manually typed text and excludes spaces. If an error occurs try using a different web browser (preferably Google Chrome or Mozilla Firefox).
  • If you copy-paste the text into the form, hidden formatting might still be included which may cause the text to exceed the 2,000 character limit resulting in an error message. We recommend you clear all formatting before pasting in the text.
  • If you have special symbols in your text, make sure you are using Unicode characters, otherwise these will not be recognised.

For detailed instructions, please watch our video on how to submit a course motivation letter.

Further details

For further information about registration and motivation letter submission please refer to the FAQ page.

Financial assistance

Financial assistance

Limited financial assistance is provided by the EMBL Advanced Training Centre Corporate Partnership Programme and EMBO in the form of registration fee waivers, travel grants and childcare grants

Your place in the meeting is only confirmed by paying the registration fee, which is mandatory even when receiving a fee waiver.

Registration fee waiver

The fee waiver will cover the registration sum that you have paid to attend the course.

Travel grant

The travel grant will cover the cost of travel (airfare, train, bus, taxi, accommodation, visa, and/or registration fees*) and is provided up to specified caps which are normally as follows:

– up to €400 for participants travelling to an EMBL Course within Europe.

– up to €1000 for participants travelling to an EMBL Course from outside Europe.

– up to €500 for any participant travelling to an EMBO Practical Course.

– up to €1000 for any participant working in Chile, India, Singapore or Taiwan travelling to an EMBO Practical Course.

– up to €700 for any participant working in Croatia, Czech Republic, Estonia, Greece, Hungary, Italy, Lithuania, Luxembourg, Poland, Slovenia, and Turkey travelling to an EMBO Practical Course.

*Registration fees are only covered for EMBO Practical Courses

The organisers may reduce the grant cap to accommodate more participants. Recipients will be notified of their travel cap amount when they are informed of the outcome of their application. Original receipts must be provided with your signature for all costs incurred within two months of completion of travel. Scanned copies cannot be accepted.

Childcare grant

There is the possibility to apply for a childcare grant to offset child care costs incurred by participants, speakers, trainers and organisers when attending a course. Eligible costs include (but are not limited to) fees for a babysitter or child-care facility and travel costs for a caregiver. Please note that priority will be given to early-stage researchers. There is a limited amount of funding available for the childcare grants and funds will be distributed amongst eligible applicants.

Boehringer Ingelheim Fonds travel grant

Applies to selected courses only. Availability will be indicated during the motivation letter submission process.

This grant covers costs related to your attendance at the course (registration, travel and accommodation costs). The grant is restricted to PhD students and postdocs who conduct basic biomedical research.

Whether you are eligible to apply for a travel grant, depends on when you received your university entrance qualification (e.g. Abitur, A-Levels, High School Diploma, Final State Examination):

– for PhD and MD students, as well as graduates, the university entrance qualification must not have been obtained more than 11 years ago at the time of the envisaged course

– for postdocs, the university entrance qualification must not have been obtained more than 13 years ago at the time of the envisaged course

Application

You may apply for financial assistance when submitting your motivation letter for courses. In your application, you will be asked to answer questions regarding why your lab cannot fund your attendance and how your attendance will make a difference to your career. Application for financial support will not affect the outcome of your registration application.

For the Boehringer Ingelheim Fonds Travel Grant, there is a pre-application question during the motivation letter submission process, and if selected you will be requested to complete a standard form and documentation consisting of your travel expense estimation.

Selection

The scientific organisers will select the recipients of registration fee waivers and travel grants during the motivation letter or abstract selection process. Results will be announced approximately 6 – 8 weeks before the event start date, however for some events this may be delayed. Selection results do not impact your admission to the meeting. Selection for registration fee waivers and travel grants is based on scientific merit, your current work or study location, the reasons for needing financial support, and the impact this event will have on your career.

Childcare grants will be allocated in the same timeframe (6-8 weeks before the event start date). Please note that priority will be given to early-stage researchers.

Reimbursement

Costs will be reimbursed after the meeting only once a reimbursement form and original receipts (from travel costs) have been received.

Further details

See our list of external funding opportunities and for further information about financial assistance please refer to the FAQ page.

Accommodation and travel

Hotel

EMBL Heidelberg site participants
Accommodation for participants attending the course at EMBL Heidelberg has been pre-booked for you at the ISG Hotel for the default dates of 13 October to 19 October (6 nights). Please note that the course registration fee includes coverage of accommodation costs in twin rooms, including breakfasts, for your stay at the ISG but that you will be required to pay an additional cost of 24 EUR per night for a single room. This should be paid by you directly to the ISG during your stay. Any additional nights need to be booked and paid for by you. We recommend that all course participants for the EMBL Heidelberg site stay at the ISG Hotel which is the dedicated hotel for the course.

Bangalore Life Science Cluster site participants

Accommodation for participants attending the course at the Bangalore Life Science Cluster campus site has been pre-booked at the hotel on campus for the default dates of 13 to 19 October (6 nights). Please note that the course registration fee includes coverage of accommodation costs in twin rooms, including breakfasts. Any additional nights need to be booked and paid for by you. We recommend that all course participants for the BLiSC campus site stay at the campus hotel which is the dedicated hotel for the course.

Travel information

For travel information, please see here.

If you are travelling to the conference within Germany then you are eligible for the Deutsche Bahn ‘Event Ticket’ (called the ‘Veranstaltungsticket’ in German). This will result in a lower ticket price if your travel distance to Heidelberg is more than 100 km. You need to provide proof of your event attendance when purchasing the ticket.

For more information in English see here or in German see here.

You can book your ticket here.

Local transport

EMBL Heidelberg site participants
Shuttle buses will go from the ISG Hotel to EMBL and back, mornings and evenings. A bus schedule and location of the bus stops will be made available prior to the meeting.

Bangalore Life Science Cluster site participants
The accommodation on campus is within walking distance of the buildings where the course will take place.

Further details

EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

Bangalore Life Science Cluster Campus: Bellary Road, Bangalore 560065, Karnataka, India

For further information on getting to EMBL Heidelberg visit our Travel Information page.

Further information on getting to Bangalore Life Science Cluster Campus will be provided to selected course participants.

For EMBL Heidelberg only: for enquiries about accommodation and local transportation please refer to the FAQ page.

On-site information

The below information applies to the EMBL Heidelberg hub. Information about on-site facilities at BLiSC will be shared with participants upon arrival.

Catering

All meals and coffee breaks are included in the registration fee. Our catering staff will prepare a wide variety of vegetarian meals, meat and fish dishes, soups, pasta, fresh fruit and vegetables, as well as a variety of desserts.

Please wear your badge at all times when serving yourself.

No food or drinks are allowed in the laboratories.

Electricity and charging station

In most places the electricity is 220 volts AC (50 cycles). An adaptor and a plug that fits the German socket may be needed for your appliances/laptop (i.e. American, Japanese, etc.). A USB charging station for electronic devices is available at the registration desk.

EMBL Merchandise

If you are interested in purchasing EMBL merchandise (products presented in the glass display in the registration area), please email the EMBL shop to place an order or get in contact with your Course Organiser.

Kindly note the EMBL shop is only open upon request and all purchases must be made in cash (Euros only).

Health and safety notes

Please read EMBL’s COVID-19 safety policy for on-site events.
Do not smoke in any EMBL building.
Eating and drinking is prohibited in all laboratories.
Do not enter any restricted areas or the laboratories unless instructed to do so.

If first aid is required …

  • The first aid room is located next to the ATC Registration Desk (room 10- 205).
  • Dial the Emergency number 222 from any EMBL internal phone only.
  • Where is the accident? What happened? How many injured?
  • Emergency number 06221-387 7821 from mobile phones.
  • Please report all accidents to the conference officer at the registration desk.

In case of fire …

  • Press the nearest fire alarm button or the Emergency number 222 from any internal phone.
  • A loud fire alarm will go off if an evacuation is required. On hearing the alarm leave the building immediately following the escape route and fire wardens and head to one of the meeting points
  • Do not use the lifts.

Beyond first aid…

Please remember to bring your own medication, if needed, to the conference. Note that the next pharmacy is a 4-minute drive from the EMBL, but for many medications you will be required to see a doctor to get a prescription.

Ensure in advance that your medical insurance will cover you during your visit in the event that you do need to see a doctor while in Heidelberg. In any case, the EMBL Course and Conference Office will assist you to get to the pharmacy and a doctor of your choice if necessary.

Internet

Wi-Fi is available on campus. Log in using the EMBL-Events network and the event specific password, which will be provided on site. The eduroam network (secure, worldwide roaming access service developed for the international research and education community) is also available.

Lost and found

‘’Lost and Found’’ items are kept at the registration desk until the end of the conference.

Luggage

There are lockers available on-site to store your luggage, which require a 2 EURO coin to operate. There is another luggage room on level E0, which is free to use but remains unlocked during the conference.

Nursing room

There is a nursing room available in the ATC Rooftop Lounge on level A29.

Photography

During the conference, an EMBL Photographer may be taking photos. If you would not like to appear in these, please inform the photographer or a member of the Course and Conference Office.

Printing

We can help to print your boarding pass/train ticket. Please send it to events@embl.de and collect your print-outs at the registration desk.

Room for prayer, yoga, and meditation

There is a room for prayer, meditation, and yoga located on level E0 behind the Auditorium. Please be respectful of others using the room.

Sightseeing

A variety of activities in Heidelberg can be found on the website of Heidelberg Marketing.

Travel to and from the venue

During the event, we provide conference shuttle buses to and from EMBL. In addition, there is the public bus 39A that serves the EMBL campus and taxis can be easily booked at any time. Information on the shuttle buses can be found on the individual event website and more detailed information on travelling to EMBL can be found on our Travel Information page.

Additional information

Address: EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

Please find additional information including FAQs, terms and conditions, COVID-19 safety policy and travelling to EMBL on our Information for Participants page.

Technical requirements and event software

(delete the technical requirements part if it is not a computer based course in the courtyard room, as well as change label of the details section to only Event Software)

Technical requirements

Below you will find the software and technical requirements for this course.

  • Participants need to bring their own laptops, which will be used to remotely access EMBL virtual machines with pre-installed software.
  • You will need admin rights to install the software required to access the virtual machines. If you do not have admin rights, please contact your technical support team in advance to make sure the software can be installed.
  • If you have a non-standard HDMI port (other than type A), you need to bring an adaptor.
  • Keyboard and PC mouse are available for use with a standard USB port. If you have a different port type, such as USB-C, you will need to bring your own.

Event software

The EMBL eCampus learning platform will be used to collaborate, communicate and network with all of the course participants. All participants will receive information on how to join shortly before the course. We recommend using Chrome, Safari or Mozilla Firefox browsers for eCampus. 

Additional information

Please find additional information including FAQs, terms and conditions, COVID-19 safety policy and travelling to EMBL on our Information for Participants page.

COVID-19 related questions

COVID-19 information for on-site events at EMBL Heidelberg can be found in our COVID-19 FAQs.

Sponsors


Course partners


Course sponsors

 

Sponsorship opportunities

We offer a variety of event sponsoring possibilities, with the flexibility to select a set sponsorship package or combine individual sponsorship options to suit your event budget. Discounts are available for companies sponsoring multiple events at EMBL Heidelberg. View other events, or contact sponsorship@embl.de for further information.

If you are interested in becoming a media partner of this event, please visit our media partnerships webpage.

Warning

EMBL wishes to warn sponsors of EMBL conferences and courses of fraudulent schemes purporting to offer sponsorship opportunities on behalf of EMBL or affiliated with EMBL officials. One current scam campaign of which we are aware is conducted using the name ‘Judy Eastman’ (judy@gopcontact.a2hosted.com) and entails approaches to sponsors offering sponsorship opportunities on EMBL’s behalf. Please be kindly advised that all relevant communication regarding sponsorship of EMBL conferences, symposia and courses is handled by EMBL directly and is sent from an official EMBL account. EMBL does not work with any external providers on sponsorship acquisition.

Please also note that:

  • EMBL never provides attendee lists for purchase. Any offers of such are fraudulent.
  • EMBL will never call or email you to ask for your credit card details or to request a payment.
  • All payments are on invoice.

Suspicious communications purportedly from, for or on behalf of EMBL should be reported to EMBL at the following email address sponsorship@embl.de.

Media kit

Want to let others know you’re attending this event? Take a look at our shareable media and feel free to use them in your social media channels or presentations.

Social 1080×1920

Social 1080×1080

Social 1600×900

PPT Slide 16×9

Date: 13 - 18 Oct 2024

Location: EMBL Heidelberg and Bangalore

Venue: EMBL Advanced Training Centre and Bangalore Life Science Cluster (BLiSC) Campus


Deadline(s):

Application: Closed


Organisers:

  • Sunil Laxman
    INSTITUTE FOR STEM CELL BIOLOGY AND REGENERATIVE MEDICINE, INDIA
    • Kiran Patil
      UNIVERSITY OF CAMBRIDGE, UK

What's new on our blog

Edit