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Plasticity in developing systems: time, space, and environment – Course and Conference Office

EMBO Practical Course

Plasticity in developing systems: time, space, and environment

Overview

Course Overview

Studying organisms in their original context and environment is one of the current grand challenges in the life sciences and a central goal of modern Developmental Biology. The interactions between organisms, and their chemical, physical and biotic environments have important consequences at the level of form, physiology and behaviour. To gain an understanding and uncover mechanistic links between these interconnected and dynamic processes, novel, interdisciplinary approaches and cutting-edge technologies are needed. The aim of this course is to expose and introduce graduate students and postdoctoral fellows to fundamental questions and challenges related to the study of how the dynamic interplay between organisms and their changing environment impacts developmental processes and evolutionary novelty. The participating students will benefit from a well-balanced curriculum with lectures and hands-on practicals. We invite external keynote speakers each day of the course, covering different topics related to how environmental factors control development, physiology, and behaviours, and emphasising developmental plasticity, timing, and metabolism. Each afternoon, EMBL groups will run lab practicals in a wide range of organisms (i.e., bacterial colonies+Dictyostelium, algae, plants, Nematostella, worms, flies, vertebrates). Most experiments will be centered around the common theme of ‘Organisms interacting with their environment’.

Audience

This course is intended for graduate students and post-doctoral fellows with a STEM background. We aim to balance the number of participants with hands-on experience and theoretical background.

Modules

  • Studying collective behaviors of soil-derived Dictyostelium and Bacilli species
  • Metabolic control of developmental timing in mouse and medaka embryos
  • Studying the role of behaviour in development of Nematostella vectensis
  • 4D imaging of development
  • Single-cell sorting of diatom symbiosis from the natural environment
  • Molecular dissection of brain pioneer cell morphogenesis in C. Elegans
  • Phenotypic plasticity of the planarian flatworms
  • Exploring animal development and evolution with synthetic biology in Drosophila Melanogaster
  • Imaging of cellular bases of root formation in the model plant Arabidopsis thaliana using a SPIM microscope
  • Biophysical properties of embryonic tissues in zebrafish

Learning outcomes

The course will provide:

1 ) an introduction to modern developmental biology questions covering a broad spectrum of developing systems

2) hands-on experiments and data analysis in a variety of model and non-model organisms.

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Please see EMBL’s COVID-19 safety policy for testing and other requirements to attend this on-site course.

Speakers

Keynote speakers

Susana Coelho

Max Planck Institute for Biology Tübingen

Germany

Kristin Tessmar

Max Perutz Labs Vienna, Austria; Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research and Carl-von-Ossietzky University, Germany

Speakers and trainers

Timo Zimmermann

EMBL Heidelberg

Germany

Trainers

LabPeople
Aulehla Sapna Chhabra – EMBL Heidelberg, Germany
Simon Knoblich – EMBL Heidelberg, Germany
CrockerLautaro Gandara – EMBL Heidelberg, Germany
Nikolaus Vlachopoulos – EMBL Heidelberg, Germany
GrebPascal Hunziker – Heidelberg University, Germany
Kiara Kaeufer – Heidelberg University, Germany
Jiao Zhao – Heidelberg University, Germany
IkmiFlorian Gabler – EMBL Heidelberg, Germany
Levin Riedel – EMBL Heidelberg, Germany
PetridouCristina Pallares Cartes – EMBL Heidelberg, Germany
Camilla Autorino – EMBL Heidelberg, Germany
Laura Rustarazo-Calvo – EMBL Heidelberg, Germany
Magdalena Schindler – EMBL Heidelberg, Germany
Prevedel/ZimmermannSamuel Davis – EMBL Heidelberg, Germany
Rory Power – EMBL Heidelberg, Germany
RaptiFrancesca Caroti – EMBL Heidelberg, Germany
Laura Sabou – EMBL Heidelberg, Germany
van GestelMireia Garriga-Canut – EMBL Heidelberg, Germany
Andrea Zanon – EMBL Heidelberg, Germany
VincentKevin Moog – EMBL Heidelberg, Germany
Thomas Beavis – EMBL Heidelberg, Germany
Moritz Winker – EMBL Heidelberg, Germany
Soraya Zwahlen – EMBL Heidelberg, Germany
VuKristina Mirkes – EMBL Heidelberg, Germany
Ana Mellado Fuentes – EMBL Heidelberg, Germany
Amrutha Palavalli – EMBL Heidelberg, Germany
Gaurav Vaidya – EMBL Heidelberg, Germany
DB unit / Microscopy supportMatt Benton

Scientific organisers

Course organiser

Nathalie Sneider

EMBL Heidelberg

Germany

Programme

Got something to say? Tweet it! #EMBOPlasticity

  • Some speakers may need to join virtually to give their lecture or Q&A, and the programme is subject to change.

Day 1 – Monday 24 July 2023
Time (Europe/Berlin)SpeakerLocation
08:40 Bus from ISG Hotel to EMBL Operon entranceISG Hotel bus stop
09:00 – 09:30Welcome, house notes and safety instructionsLarge Operon
09:30 – 10:30Networking activityLarge Operon
10:30 – 11:00Coffee BreakOperon Foyer
11:00 – 12:00Introduction to practical 1
Jordi van Gestel – EMBL Heidelberg, Germany
Large Operon
12:00 – 13:00LunchEMBL Canteen
13:00 – 14:00Field trip to collect samples
Depart Operon Foyer
14:00 – 17:00Practical 1: Studying collective behaviors of soil-derived Dictyostelium and Bacilli species
Jordi van Gestel and members of his lab – EMBL Heidelberg, Germany
Training Lab B
17:00 – 18:00Keynote Lecture 1: Environment and the origins of complex behaviour in biological systems
Manu Prakash – Stanford University, USA
Large Operon
16:00 – 19:00Networking: Meet the speaker with Manu Prakash – Stanford University, USA
Operon Foyer
19:00 – 20:00DinnerEMBL Canteen
20:00 – 22:00Poster session 1Operon Foyer
22:00Departure to ISG Hotel and end of Day 1ATC entrance
Day 2 – Tuesday 25 July 2023
Time (Europe/Berlin)SpeakerLocation
09:15Bus from ISG to EMBLISG Hotel bus stop
09:30 – 09:35Overview of the dayCourtyard A(
09:35 – 10:30Keynote Lecture 2: The developmental biology of holobionts
Scott Gilbert – Swarthmore College, USA
Large Operon
10:30 – 11:00Coffee breakOperon Foyer
11:00 – 12:00Networking: Meet the speaker Scott Gilbert – Swarthmore College, USAOperon Foyer
12:00 – 13:00LunchEMBL Canteen
13:00 – 14:00Introduction to practical 2
Flora Vincent – EMBL Heidelberg, Germany
Courtyard Room A & B
14:00 – 18:00Practical 2: Single-cell sorting of diatom symbiosis from the natural environment
Flora Vincent and members of her lab – EMBL Heidelberg, Germany
Training Lab B
18:00 – 19:00DinnerEMBL Canteen
19:00 – 21:00Poster session 2Operon Foyer
21:00Departure to ISG Hotel and end of Day 2ATC entrance
Day 3 – Wednesday 26 July 2023
Time (Europe/Berlin)SpeakerLocation
09:15Bus from the ISG Hotel to EMBLISG Hotel bus stop
09:30 – 09:35Overview of the dayLarge Operon
09:35 – 10:30Keynote Lecture 3: Evolution of a mechanism of plasticity in eyespot wing patterns
Antonia Monteiro – National University of Singapore, Singapore
Large Operon
10:30 – 11:00Coffee breakOperon Foyer
11:00 – 12:00Networking: Meet the speaker with Antonia Monteiro – National University of Singapore, Singapore
Large Operon
12:00 – 13:00LunchEMBL Canteen
13:00 – 14:00Introduction to practical 3
Justin Crocker – EMBL Heidelberg, Germany
Courtyard Room A & B
14:00 – 18:00Practical 3: Exploring animal development and evolution with synthetic biology in Drosophila Melanogaster
Justin Crocker and members of his lab – EMBL Heidelberg, Germany
Training Lab B
18:00 – 19:00DinnerEMBL Canteen
19:00Continued networking Operon Foyer
19:45Departure to ISG Hotel, end of Day 4ATC entrance
Day 4 – Thursday 27 July 2023
Time (Europe/Berlin)SpeakerLocation
09:15Bus from the ISG Hotel to EMBLISG Hotel bus stop
09:30 – 09:35Overview of the dayLarge Operon
09:35 – 10:30Keynote Lecture 4: The effect of variation in light in the biological processes
Kristin Tessmar – Max Perutz Labs Vienna, Austria
Large Operon
10:30 – 11:00Coffee BreakOperon Foyer
11:00 – 12:00Networking: Meet the speaker with Kristin Tessmar – Max Perutz Labs Vienna, AustriaLarge Operon
12:00 – 13:00LunchEMBL Canteen
13:00 – 14:00Introduction to practical 4
Hanh Vu – EMBL Heidelberg, Germany
Large Operon
14:00 – 18:00Practical 4: Phenotypic plasticity of the planarian flatworms
Hanh Vu and members of her lab – EMBL Heidelberg, Germany
Training Lab B
18:00 – 19:00Dinner
19:00 – 21:00Round Table discussion: Responsible conduct of researchATC Rooftop Lounge
21:00Departure to ISG Hotel, end of Day 4ATC entrance
Day 5 – Friday 28 July 2023
Time (Europe/Berlin)SpeakerLocation
08:40 Bus from the ISG Hotel to EMBLISG Hotel bus stop
09:00 – 09:05Overview of the dayCourtyard Room A & B
09:05 – 10:00Introduction to practical 5
Nicoletta Petridou – EMBL Heidelberg, Germany
Courtyard Room A & B
10:00 – 12:00Practical 5 part 1: Biophysical properties of embryonic tissues in Zebrafish
Nicoletta Petridou and members of her lab – EMBL Heidelberg
Training Lab B
12:00 – 13:00LunchEMBL Canteen
13:00 – 18:00Practical 5 part 2: Biophysical properties of embryonic tissues in Zebrafish
Nicoletta Petridou and members of her lab – EMBL Heidelberg
Training Lab B
18:00 – 19:00Dinner
19:00 – 21:00Data analysis practical 5Computer Training Lab
21:00Departure to ISG Hotel, end of Day 5ATC entrance
Day 6 – Saturday 29 July 2023
Time (Europe/Berlin)SpeakerLocation
09:15Bus from ISG to EMBLISG Hotel bus stop
09:30 – 09:35Overview of the dayLarge Operon
09:35 – 10:30Keynote Lecture 5: The energetic cost of early development in their environment
Jonathan Rodenfels – Max Planck Institute of Molecular Cell Biology and Genetics, Germany
Large Operon
10:30 – 11:00Coffee breakOperon Foyer
11:00 – 12:00Networking: Meet the speaker with Jonathan Rodenfels – Max Planck Institute of Molecular Cell Biology and Genetics, GermanyOperon Foyer
12:00 – 13:00LunchEMBL Canteen
13:00 – 14:00Introduction to practical 6
Alexander Aulehla – EMBL Heidelberg, Germany
Aissam Ikmi – EMBL Heidelberg, Germany
Courtyard Room A & B
14:00 – 18:00Practical 6: Metabolic control of developmental timing
Alexander Aulehla and members of his lab – EMBL Heidelberg, Germany
Aissam Ikmi and members of his lab – EMBL Heidelberg, Germany
Training Lab B
18:00 – 19:00DinnerEMBL Canteen
19:00 – 19:45Continued networkingOperon Foyer
19:45Departure to ISG Hotel, end of Day 6ATC entrance
Day 7 – Sunday 30 July 2023
Free Day
Day 8 – Monday 31 July 2023
Time (Europe/Berlin)SpeakerLocation
09:15Bus from the ISG Hotel to EMBLISG Hotel bus stop
09:30 – 09:35Overview of the dayLarge Operon
09:35 – 10:30Keynote Lecture 6: The life cycle and reproduction of brown algae
Susana Coehlo, Max Planck Institute for Biology Tübingen
Large Operon
10:30 – 11:00Coffee BreakOperon Foyer
11:00 – 12:00Networking: Meet the speaker with Susana Coehlo, Max Planck Institute for Biology TübingenLarge Operon
12:00 – 13:00LunchEMBL Canteen
13:00 – 14:00Introduction to practical 7
Georgia Rapti – EMBL Heidelberg, Germany
Courtyard Room A & B
14:00 – 18:00Practical 7: Molecular dissection of brain pioneer cell morphogenesis in C. Elegans
Georgia Rapti and members of her lab – EMBL Heidelberg, Germany
Training Lab B
18:00 – 19:00DinnerEMBL Canteen
19:00 – 19:45Continued networking Operon Foyer
19:45Departure to ISG Hotel, end of Day 8ATC entrance
Day 9 – Tuesday 1 August 2023
Time (Europe/Berlin)SpeakerLocation
09:15Bus from the ISG Hotel to EMBLISG Hotel bus stop
09:30 – 09:35Overview of the dayComputer Training Lab
09:35 – 10:30Data Analysis Practical 6, 7Computer Training Lab
10:30 – 11:00Coffee BreakOperon Foyer
11:00 – 12:00Data Analysis Practical 6, 7Computer Training Lab
12:00 – 13:00LunchEMBL Canteen
13:00 – 14:00Introduction to practical 8
Robert Prevedel – EMBL Heidelberg, Germany
Courtyard Room A & B
14:00 – 18:00Practical 8: 4D imaging of development
Robert Prevedel and Timo Zimmermann – EMBL Heidelberg, Germany
Training Lab B
18:00 – 19:00Dinner
19:00 – 21:00Round Table discussion: Responsible conduct of researchATC Rooftop Lounge
21:00Departure to ISG Hotel, end of Day 9ATC entrance
Day 10 – Wednesday 2 August 2023
Time (Europe/Berlin)SpeakerLocation
09:15Bus from the ISG Hotel to EMBLISG Hotel bus stop
09:30 – 09:35Overview of the dayLarge Operon
09:35 – 10:30Keynote Lecture 7: Plant development and physiology
Alexander Jones – University of Cambridge, UK
Large Operon
10:30 – 11:00Coffee breakOperon Foyer
11:00 – 12:00Networking: Meet the speaker with Alexander Jones – University of Cambridge, UKLarge Operon
12:00 – 13:00LunchEMBL Canteen
13:00 – 14:00Introduction to practical 9
Thomas Greb – Centre for Organismal Studies,
Uni Heidelberg, Heidelberg
Courtyard Room A & B
14:00 – 18:00Practical 9: Plant development and physiology
Thomas Greb and member of his lab – Centre for Organismal Studies,
Uni Heidelberg, Heidelberg
Training Lab B
18:00 – 19:00Dinner
19:00 – 21:00Group activity: Data analysis of practicals 9Computer Training Lab
21:00Departure to ISG Hotel, end of Day 10ATC entrance
Day 11 – Thursday 3 August 2023
Time (Europe/Berlin)SpeakerLocation
09:15Bus from the ISG Hotel to EMBLISG Hotel bus stop
09:30 – 09:35Overview of the dayCourtyard Room A & B
09:35 – 10:30Follow up on the field trip samplesCourtyard Room A & B
10:30 – 11:00Coffee BreakCourtyard Room A & B
11:00 – 12:00Time to prepare the presentationCourtyard Room A & B
12:00 – 13:00LunchEMBL Canteen
13:00 – 15:00Time to prepare the presentationsCourtyard Room A & B
15:00 – 15:30Coffee BreakCourtyard Room A & B
15:30 – 17:30Presentations by the participantsLarge Operon
18:00 – 22:00BBQ and PartyOperon Foyer and Terrace
22:00Departure to ISG Hotel, end of Day 11ATC entrance
Day 12 – Friday 4 August 2023
Time (Europe/Berlin)SpeakerLocation
09:15Bus from the ISG Hotel to EMBLISG Hotel bus stop
09:30 – 09:35Overview of the dayLarge Operon
09:35 – 10:30Final remarksLarge Operon
10:30 – 11:00Coffee breakOperon Foyer
11:00 – 12:00Closing: wrap up and feedback sessionLarge Operon
12:00 – 13:00LunchEMBL Canteen
13:00Departure ATC entrance

Practical information

Registration fees and motivation letter

The course is limited to 20 participants. For selection purposes, please note that your application will not be considered without a letter of motivation.

Registration

Registration fees include admission, course materials, COVID-19 safety measures, meals and coffee breaks. This EMBO course includes accommodation and transportation to and from the ISG Hotel to the venue.

Academia€500
PhD Student€500
Industry€1200

A letter to support your visa application will be issued, on request, once payment of the registration fee is confirmed. We recommend that you book your visa appointment as soon as possible, to avoid any delay with your visa application.

Confirmation and payment

The registration fee should be paid only after acceptance to the course. The results will be announced approximately 2-3 weeks after the application deadline.

Motivation letter submission

After you have logged in and successfully registered, you will receive an email asking you to submit your motivation letter. Click on the link provided and enter your motivation letter in the text box provided. Alternatively you can submit your motivation letter by clicking on the link on the confirmation page directly after registering.

Instructions

  1. Include your relevant skills, experience and qualifications showing why you would be suitable for the course.
  2. Explain why you would like to attend, including what you can contribute and how you think you will benefit from the course.

Please note:

  • The limit of 2000 characters refers to manually typed text and excludes spaces. If an error occurs try using a different web browser (preferably Google Chrome or Mozilla Firefox).
  • If you copy-paste the text into the form, hidden formatting might still be included which may cause the text to exceed the 2,000 character limit resulting in an error message. We recommend you clear all formatting before pasting in the text.
  • If you have special symbols in your text, make sure you are using Unicode characters, otherwise these will not be recognised.

For detailed instructions, please watch our video on how to submit a course motivation letter.

Further details

For further information about registration and motivation letter submission please refer to the FAQ page.

Financial assistance

Financial assistance

Limited financial assistance is provided by the EMBL Advanced Training Centre Corporate Partnership Programme and EMBO in the form of both registration fee waivers and travel grants. Availability is limited to participants attending on-site EMBL Courses and virtual or on-site EMBO Practical Courses in Heidelberg, and will be indicated during the motivation letter submission process.

Your place in the course is only confirmed by paying the registration fee, which is mandatory even when receiving a fee waiver.

Registration fee waiver

The fee waiver will cover the registration sum that you have paid to attend the course.

Travel grant

The travel grant will cover the cost of travel (airfare, train, bus, taxi, accommodation, visa, and/or registration fees*) and is provided up to specified caps which are normally as follows:

– up to €400 for participants travelling to an EMBL Course within Europe.

– up to €1000 for participants travelling to an EMBL Course from outside Europe.

– up to €500 for any participant travelling to an EMBO Practical Course.

– up to €1000 for any participant working in Chile, India, Singapore or Taiwan travelling to an EMBO Practical Course.

– up to €700 for any participant working in Croatia, Czech Republic, Estonia, Greece, Hungary, Italy, Lithuania, Luxembourg, Poland, Slovenia, and Turkey travelling to an EMBO Practical Course.

*Registration fees are only covered for EMBO Practical Courses

The organisers may reduce the grant cap to accommodate more participants. Recipients will be notified of their travel cap amount when they are informed of the outcome of their application. Original receipts must be provided with your signature for all costs incurred within two months of completion of travel. Scanned copies cannot be accepted.

Childcare grant (EMBO Practical Courses only)

For EMBO Practical Course participants with children, there is the possibility to apply for a childcare grant to offset child care costs incurred by participants or speakers when participating at a course. Eligible costs include fees for a babysitter or child-care facility, travel costs for a caregiver, or travel costs for taking the child to the meeting etc. Please note that priority will be given to early-stage researchers. A maximum amount of €500 can be awarded per participant applying for an EMBO childcare grant. 

Boehringer Ingelheim Fonds travel grant

Applies to selected courses only. Availability will be indicated during the motivation letter submission process.

This grant covers costs related to your attendance at the course (registration, travel and accommodation costs). The grant is restricted to PhD students and postdocs who conduct basic biomedical research.

Whether you are eligible to apply for a travel grant, depends on when you received your university entrance qualification (e.g. Abitur, A-Levels, High School Diploma, Final State Examination):

– for PhD and MD students, as well as graduates, the university entrance qualification must not have been obtained more than 11 years ago at the time of the envisaged course

– for postdocs, the university entrance qualification must not have been obtained more than 13 years ago at the time of the envisaged course

Application

You may apply for financial assistance when submitting your motivation letter for courses. In your application, you will be asked to answer questions regarding why your lab cannot fund your attendance and how your attendance will make a difference to your career. Application for financial support will not affect the outcome of your registration application.

For the Boehringer Ingelheim Fonds Travel Grant, there is a pre-application question during the motivation letter submission process, and if selected you will be requested to complete a standard form and documentation consisting of your travel expense estimation.

Selection

The scientific organisers will select the recipients of all financial assistance during the motivation letter selection process. Results will be announced approximately 6-8 weeks before the event start date, however for some events this may be delayed. Selection results do not impact your admission to the course. Selection is based on scientific merit, your current work or study location, the reasons for needing financial support, and the impact this event will have on your career.

Reimbursement

Costs will be reimbursed after the meeting only once a reimbursement form and original receipts (from travel costs) have been received.

Further details

See our list of external funding opportunities and for further information about financial assistance please refer to the FAQ page.

Accommodation and shuttles

Hotel

Accommodation has been pre-booked for you at the ISG Hotel for the default dates of Sunday 23 July to 4 August (12 nights). Please note that the course registration fee includes coverage of accommodation costs in twin rooms, including breakfasts, for your stay at the ISG. In case you would like to have a single room, please let us know and please note that you will be required to pay an additional cost of 24€ per night. This should be paid by you directly to the ISG during your stay. Any additional nights need to be booked and paid for by you. We recommend that all course participants stay at the ISG Hotel which is the dedicated hotel for the course.

Local transport

Shuttle buses will go from the ISG Hotel to EMBL and back, mornings and evenings. A bus schedule and location of the bus stops will be made available prior to the meeting.

Further details

Address: EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

For further information on getting to EMBL Heidelberg visit our Travel Information page.

For enquiries about accommodation and local transportation please refer to the FAQ page.

Event software

Event software

The EMBL eCampus learning platform will be used to collaborate, communicate and network with all of the course participants. All participants will receive information on how to join shortly before the course. We recommend using Chrome, Safari or Mozilla Firefox browsers for eCampus. 

Additional information

Please find additional information including FAQs, terms and conditions, COVID-19 safety policy and travelling to EMBL on our Information for Participants page.

COVID-19 related questions

COVID-19 information for on-site events at EMBL Heidelberg can be found in our COVID-19 FAQs.

Sponsors

Event Sponsor

Event Supporter

Sponsorship opportunities

We offer a variety of event sponsoring possibilities, with the flexibility to select a set sponsorship package or combine individual sponsorship options to suit your event budget. Discounts are available for companies sponsoring multiple events at EMBL Heidelberg. View other events, or contact sponsorship@embl.de for further information.

If you are interested in becoming a media partner of this event, please visit our media partnerships webpage.

Warning

EMBL wishes to warn sponsors of EMBL conferences and courses of fraudulent schemes purporting to offer sponsorship opportunities on behalf of EMBL or affiliated with EMBL officials. One current scam campaign of which we are aware is conducted using the name ‘Judy Eastman’ (judy@gopcontact.a2hosted.com) and entails approaches to sponsors offering sponsorship opportunities on EMBL’s behalf. Please be kindly advised that all relevant communication regarding sponsorship of EMBL conferences, symposia and courses is handled by EMBL directly and is sent from an official EMBL account. EMBL does not work with any external providers on sponsorship acquisition.

Please also note that:

  • EMBL never provides attendee lists for purchase. Any offers of such are fraudulent.
  • EMBL will never call or email you to ask for your credit card details or to request a payment.
  • All payments are on invoice.

Suspicious communications purportedly from, for or on behalf of EMBL should be reported to EMBL at the following email address sponsorship@embl.de.

Media kit

Want to let others know you’re attending this event? Take a look at our shareable media and feel free to use them in your social media channels or presentations.

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Date: 24 Jul - 4 Aug 2023

Location: EMBL Heidelberg

Venue: EMBL Advanced Training Centre


Deadline(s):

Application: Closed


Organisers:

  • Alexander Aulehla
    EMBL Heidelberg, Germany

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