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EMBL Imaging Centre

Open access to cutting-edge electron and light microscopy

We provide researchers from Europe and beyond with a synergistic portfolio of imaging services including cryo-EM, super-resolution and intravital microscopy to enable new ground-breaking research that crosses the scales of biology.

Single Molecule Localisation Microscopy (SMLM)

If you want to know how SMLM works in comparison to other super-resolution technologies we offer – read more here.

3D-SMLM

Three-dimensional single-molecule localisation microscopy (3D-SMLM) is an advanced light microscopy methodology based on localisation of sparse single-molecule emitters for computational reconstruction of a super-resolved image. The 3D-SMLM at the EMBL IC has been developed in collaboration with the lab of Jonas Ries at EMBL. At the core of the microscope is an extremely stable inverted microscope. (f)PALM/(d)STORM workflows can be accommodated and additional functionalities will be added dependent on user need (e.g. support for live-cell imaging/PAINT/SOFI and others).


Features

  • Ratiometric multi-colour imaging (e.g. simultaneous multi-colour imaging of spectrally overlapping fluorophores)
  • Homogenised Epi-/HILO/TIRF illumination with variable illuminated field ca. ⌀20 – 70 microns, Super-resolution over large field of views (up to ⌀70 microns)
  • Option for 3D imaging via astigmatism
  • < 10 nm localisation precision (in x,y, dependent on fluorophore, imaging mode, < 20 nm in z)
  • Automated high-throughput imaging (e.g. multiple field of views)

Specifications

  • 4 lasers generating ca. 100 mW at source (Toptica iChrome MLE, 405, 488, 561, 640 nm), additional booster laser at 640 nm (Toptica iBeam Smart 200 mW).
  • Back-thinned sCMOS camera (Hamamatsu Orca Fusion BT >95% QE, <0.7 e- read noise)
  • Focus locking via reflection of NIR laser (Toptica iBeam Smart, 785 nm)
  • Motorized XY nanopositioning stage (SmarAct), Piezo actuator (PI PIFOC, P-726) for objective.
  • Olympus 100x/1.45 (oil), 100x/1.35 (silicone oil) objective lenses
  • The microscope can be configured for the needs of the experiment via a range of switchable optical elements. 3D imaging is achieved using the astigmatic method and analysis/reconstruction is achieved using the SMAP toolset
Credit: Merle Hantsche-Grininger/EMBL
3D-SMLM images of U2OS Nup96-mEGFP cells stained with Q nanobody AF647 (orange) and WGA-CF680 (blue). Left: Zoom in on several nuclear pores. Top right: an XY view of a single nuclear pore showing the ring structure and separation of the two dyes. Bottom right: an XZ view of the same nuclear pore, showing
that the two stacked rings can be resolved. Scale bars, 100 nm. Credit: Merle Hantsche-Grininger/EMBL.
Credit: Stuart Ingham/EMBL.
3D-SMLM at IC. Credit: Stuart Ingham/EMBL.
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