Spatial and single-cell metabolomics
Imaging mass spectrometry
| cpyMSpec | High performance implementations shadowing pyMSpec |
| pyImagingMSpec | Python library for handling imaging mass spectrometry data |
| pyimzML | A parser to read .imzML files with Python |
| pyMSpec | Python library for mass spectrometry data |
| pySM | Python library for metabolite annotation of imaging mass spectrometry |
| spatial-metabolomics | Metabolite annotation engine for imaging mass spectrometry developed in the framework of the EU H2020 project METASPACE |
Liquid chromatography mass spectrometry
| curatr | Web-app for selecting and exporting high quality tandem-ms reference spectra |
| Optimus | Workflow for feature detection, quantification, filtering, and annotation for LC-MS |
| OptimusViewer | An app for visualising LC-MS features |
Visualisation
| ili | Google Chrome app for visualization of spatially mapped data in 2D and 3D |