![](https://www.embl.org/groups/bioinformatics-rome/wp-content/uploads/2022/03/picasso-300x169.jpg)
Snakemake profile – 2: Reducing command-line options with profile
A profile is a folder that contains all the configuration parameters to successfully run your pipeline. Of note, if you have used a cluster.json file before, be aware that it has been deprecated. Preparation of files (if you skipped the first post) Run the following script to create the folder…