Publications – Duke Team

Synchrotron X-ray imaging of soft biological tissues - principles, applications and future prospects.

Albers J, Svetlove A, Duke E

Journal of cell science, 2024

doi:10.1242/jcs.261953.

High Throughput Tomography (HiTT) on EMBL beamline P14 on PETRA III.

Albers J, Nikolova M, Svetlove A, Darif N, Lawson MJ, Schneider TR, Schwab Y, Bourenkov G, Duke E

Journal of synchrotron radiation, 2024

doi:10.1107/s160057752300944x.

From Organ to Organelle: towards a Multimodal 3D Cell Atlas of the Malaria Parasite Mosquito stages using Correlative Light, X-ray and volume Electron Microscopy.

Darif N, Albers J, Ronchi P, Duke L, Frischknecht F, Schwab Y

Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada, 2023

doi:10.1093/micmic/ozad067.615.

REMBI: recommended metadata for biological images-enabling reuse of microscopy data in biology.

Sarkans U, Chiu W, Collinson L, Darrow MC, Ellenberg J, Grunwald D, Hériché JK, Iudin A, Martins GG, Meehan T, Narayan K, Patwardhan A, Russell MRG, Saibil HR, Strambio-De-Castillia C, Swedlow JR, Tischer C, Uhlmann V, Verkade P, Barlow M, Bayraktar O, Birney E, Catavitello C, Cawthorne C, Wagner-Conrad S, Duke E, Paul-Gilloteaux P, Gustin E, Harkiolaki M, Kankaanpää P, Lemberger T, McEntyre J, Moore J, Nicholls AW, Onami S, Parkinson H, Parsons M, Romanchikova M, Sofroniew N, Swoger J, Utz N, Voortman LM, Wong F, Zhang P, Kleywegt GJ, Brazma A

Nature methods, 2021

doi:10.1038/s41592-021-01166-8.

Cryo-soft X-ray tomography: using soft X-rays to explore the ultrastructure of whole cells.

Harkiolaki M, Darrow MC, Spink MC, Kosior E, Dent K, Duke E

Emerging topics in life sciences, 2018

doi:10.1042/ETLS20170086.

Volume segmentation and analysis of biological materials using SuRVoS (Super-region Volume Segmentation) Workbench.

Darrow MC, Luengo I, Basham M, Spink MC, Irvine S, French AP, Ashton AW, Duke EMH

Journal of visualized experiments : JoVE, 2017

doi:10.3791/56162.

Parasitophorous vacuole poration precedes its rupture and rapid host erythrocyte cytoskeleton collapse in Plasmodium falciparum egress.

Hale VL, Watermeyer JM, Hackett F, Vizcay-Barrena G, van Ooij C, Thomas JA, Spink MC, Harkiolaki M, Duke E, Fleck RA, Blackman MJ, Saibil HR

Proceedings of the National Academy of Sciences of the United States of America, 2017

doi:10.1073/pnas.1619441114.

Correlative cryo-fluorescence and cryo-soft X-ray tomography of adherent cells at European synchrotrons.

Carzaniga R, Domart MC, Duke E, Collinson LM

Methods in cell biology, 2014

doi:10.1016/B978-0-12-801075-4.00008-2.

A 3D cellular context for the macromolecular world.

Patwardhan A, Ashton A, Brandt R, Butcher S, Carzaniga R, Chiu W, Collinson L, Doux P, Duke E, Ellisman MH, Franken E, Grünewald K, Heriche JK, Koster A, Kühlbrandt W, Lagerstedt I, Larabell C, Lawson CL, Saibil HR, Sanz-García E, Subramaniam S, Verkade P, Swedlow JR, Kleywegt GJ

Nature structural & molecular biology, 2014

doi:10.1038/nsmb.2897.

Imaging endosomes and autophagosomes in whole mammalian cells using correlative cryo-fluorescence and cryo-soft X-ray microscopy (cryo-CLXM).

Duke EM, Razi M, Weston A, Guttmann P, Werner S, Henzler K, Schneider G, Tooze SA, Collinson LM

Ultramicroscopy, 2014

doi:10.1016/j.ultramic.2013.10.006.

Biological applications of cryo-soft X-ray tomography.

Duke E, Dent K, Razi M, Collinson LM

Journal of microscopy, 2014

doi:10.1111/jmi.12139.

Cryo-soft X-ray tomography: a journey into the world of the native-state cell.

Carzaniga R, Domart MC, Collinson LM, Duke E

Protoplasma, 2014

doi:10.1007/s00709-013-0583-y.

Macromolecular crystallography at synchrotron radiation sources: current status and future developments.

Duke E, Johnson L.N

2010

doi:10.1098/rspa.2010.0448.

New light for science: synchrotron radiation in structural medicine.

Sorensen TL, McAuley KE, Flaig R, Duke EM

Trends in biotechnology, 2006

doi:10.1016/j.tibtech.2006.09.006.

Automation of the collection and processing of X-ray diffraction data -- a generic approach.

Leslie AG, Powell HR, Winter G, Svensson O, Spruce D, McSweeney S, Love D, Kinder S, Duke E, Nave C

Acta crystallographica. Section D, Biological crystallography, 2002

doi:10.1107/s0907444902016864.

MAD analyses of yeast 5-aminolaevulinate dehydratase: their use in structure determination and in defining the metal-binding sites.

Erskine PT, Duke EM, Tickle IJ, Senior NM, Warren MJ, Cooper JB

Acta crystallographica. Section D, Biological crystallography, 2000

doi:10.1107/s0907444900000597.

The high-resolution crystal structure of the molybdate-dependent transcriptional regulator (ModE) from Escherichia coli: a novel combination of domain folds.

Hall DR, Gourley DG, Leonard GA, Duke EM, Anderson LA, Boxer DH, Hunter WN

The EMBO journal, 1999

doi:10.1093/emboj/18.6.1435.

Two crystal forms of ModE, the molybdate-dependent transcriptional regulator from Escherichia coli.

Hall DR, Gourley DG, Duke EM, Leonard GA, Anderson LA, Pau RN, Boxer DH, Hunter WN

Acta crystallographica. Section D, Biological crystallography, 1999

doi:10.1107/s0907444998011354.

Structure determination of a 16.8 kDa copper protein at 2.1 A resolution using anomalous scattering data with direct methods.

Harvey I, Hao Q, Duke EM, Ingledew WJ, Hasnain SS

Acta crystallographica. Section D, Biological crystallography, 1998

doi:10.1107/s0907444998005423.

Crystal structures of native and recombinant yeast fumarase.

Weaver T, Lees M, Zaitsev V, Zaitseva I, Duke E, Lindley P, McSweeny S, Svensson A, Keruchenko J, Keruchenko I, Gladilin K, Banaszak L

Journal of molecular biology, 1998

doi:10.1006/jmbi.1998.1862.

Beamline 14: a new multipole wiggler beamline for protein crystallography on the SRS.

Duke EM, Kehoe RC, Rizkallah PJ, Clarke JA, Nave C

Journal of synchrotron radiation, 1998

doi:10.1107/S0909049597017664.

The "prismane" protein resolved: X-ray structure at 1.7 Å and multiple spectroscopy of two novel 4Fe clusters.

Arendsen AF, Hadden J, Card G, McAlpine A, Bailey S, Zaitsev V, Duke EMH, Lindley PF, Krockel M, Trautwein AX, Feiters MC, Charnock JM, Garner CD, Marritt SJ, Thomson AJ, Kooter IM, Johnson MK, van den Berg WAM, van Dongen WMAM, Hagen WR

1998

doi:10.1007/s007750050210.