Rapid generation of homozygous fluorescent knock-in human cells using CRISPR-Cas9 genome editing and validation by automated imaging and digital PCR screening.

Callegari A, Kueblbeck M, Morero NR, Serrano-Solano B, Ellenberg J

Nature protocols, 2024

doi:10.1038/s41596-024-01043-6.

A liquid-like coat mediates chromosome clustering during mitotic exit.

Hernandez-Armendariz A, Sorichetti V, Hayashi Y, Koskova Z, Brunner A, Ellenberg J, Šarić A, Cuylen-Haering S

Molecular cell, 2024

doi:10.1016/j.molcel.2024.07.022.

Integrative spatiotemporal modeling of biomolecular processes: application to the assembly of the Nuclear Pore Complex.

Latham AP, Tempkin JOB, Otsuka S, Zhang W, Ellenberg J, Sali A

bioRxiv, 2024

doi:10.1101/2024.08.06.606842.

Quantitative imaging of loop extruders rebuilding interphase genome architecture after mitosis.

Brunner A, Morero NR, Zhang W, Hossain MJ, Lampe M, Pflaumer H, Halavatyi A, Peters J, Beckwith KS, Ellenberg J

bioRxiv, 2024

doi:10.1101/2024.05.29.596439.

Recognising the importance and impact of Imaging Scientists: Global guidelines for establishing career paths within core facilities.

Wright GD, Thompson KA, Reis Y, Bischof J, Hockberger PE, Itano MS, Yen L, Adelodun ST, Bialy N, Brown CM, Chaabane L, Chew TL, Chitty AI, Cordelières FP, De Niz M, Ellenberg J, Engelbrecht L, Fabian-Morales E, Fazeli E, Fernandez-Rodriguez J, Ferrando-May E, Fletcher G, Galloway GJ, Guerrero A, Guimarães JM, Jacobs CA, Jayasinghe S, Kable E, Kitten GT, Komoto S, Ma X, Marques JA, Millis BA, Miranda K, JohnO'Toole P, Olatunji SY, Paina F, Pollak CN, Prats C, Pylvänäinen JW, Rahmoon MA, Reiche MA, Riches JD, Rossi AH, Salamero J, Thiriet C, Terjung S, Vasconcelos ADS, Keppler A

Journal of microscopy, 2024

doi:10.1111/jmi.13307.

Author correction: Pulsed stimulated Brillouin microscopy enables high-sensitivity mechanical imaging of live and fragile biological specimens.

Yang F, Bevilacqua C, Hambura S, Neves A, Gopalan A, Watanabe K, Govendir M, Bernabeu M, Ellenberg J, Diz-Muñoz A, Köhler S, Rapti G, Jechlinger M, Prevedel R

Nature methods, 2024

doi: 10.1038/s41592-024-02259-w.

Genetically encoded multimeric tags for subcellular protein localization in cryo-EM.

Fung HKH, Hayashi Y, Salo VT, Babenko A, Zagoriy I, Brunner A, Ellenberg J, Müller CW, Cuylen-Haering S, Mahamid J

Nature methods, 2023

doi:10.1038/s41592-023-02053-0.

Pulsed stimulated Brillouin microscopy enables high-sensitivity mechanical imaging of live and fragile biological specimens.

Yang F, Bevilacqua C, Hambura S, Neves A, Gopalan A, Watanabe K, Govendir M, Bernabeu M, Ellenberg J, Diz-Muñoz A, Köhler S, Rapti G, Jechlinger M, Prevedel R

Nature methods, 2023

doi:10.1038/s41592-023-02054-z.

Simulating structurally variable Nuclear Pore Complexes for Microscopy.

Theiss M, Hériché JK, Russell C, Helekal D, Soppitt A, Ries J, Ellenberg J, Brazma A, Uhlmann V

Bioinformatics (Oxford, England), 2023

doi:10.1093/bioinformatics/btad587.

Embryo-uterine interaction coordinates mouse embryogenesis during implantation.

Bondarenko V, Nikolaev M, Kromm D, Belousov R, Wolny A, Blotenburg M, Zeller P, Rezakhani S, Hugger J, Uhlmann V, Hufnagel L, Kreshuk A, Ellenberg J, van Oudenaarden A, Erzberger A, Lutolf MP, Hiiragi T

The EMBO journal, 2023

doi:10.15252/embj.2022113280.

Using AI in bioimage analysis to elevate the rate of scientific discovery as a community.

Nogare DD, Hartley M, Deschamps J, Ellenberg J, Jug F

Nature methods, 2023

doi:10.1038/s41592-023-01929-5.

High-resolution line-scan Brillouin microscopy for live imaging of mechanical properties during embryo development.

Bevilacqua C, Gomez JM, Fiuza UM, Chan CJ, Wang L, Hambura S, Eguren M, Ellenberg J, Diz-Muñoz A, Leptin M, Prevedel R

Nature methods, 2023

doi:10.1038/s41592-023-01822-1.

A quantitative map of nuclear pore assembly reveals two distinct mechanisms.

Otsuka S, Tempkin JOB, Zhang W, Politi AZ, Rybina A, Hossain MJ, Kueblbeck M, Callegari A, Koch B, Morero NR, Sali A, Ellenberg J

Nature, 2023

doi:10.1038/s41586-022-05528-w.

Reply to: assessment of 3D MINFLUX data for quantitative structural biology in cells.

Gwosch KC, Balzarotti F, Pape JK, Hoess P, Ellenberg J, Ries J, Matti U, Schmidt R, Sahl SJ, Hell SW

Nature methods, 2022

doi:10.1038/s41592-022-01695-w.

Genetically encoded multimeric tags for intracellular protein localisation in cryo-EM.

Fung KHH, Hayashi Y, Salo TV, Babenko A, Zagoriy I, Brunner A, Ellenberg J, Müller CW, Cuylen-Haering S, Mahamid J

bioRxiv, 2022

doi:10.1101/2022.12.10.519870.

Dual spindles assemble in bovine zygotes despite the presence of paternal centrosomes.

Schneider I, de Ruijter-Villani M, Hossain MJ, Stout TAE, Ellenberg J

The Journal of cell biology, 2021

doi:10.1083/jcb.202010106.

3D super-resolution fluorescence microscopy maps the variable molecular architecture of the Nuclear Pore Complex.

Sabinina VJ, Hossain MJ, Hériché JK, Hoess P, Nijmeijer B, Mosalaganti S, Kueblbeck M, Callegari A, Szymborska A, Beck M, Ries J, Ellenberg J

Molecular biology of the cell, 2021

doi:10.1091/mbc.E20-11-0728.

REMBI: recommended metadata for biological images-enabling reuse of microscopy data in biology.

Sarkans U, Chiu W, Collinson L, Darrow MC, Ellenberg J, Grunwald D, Hériché JK, Iudin A, Martins GG, Meehan T, Narayan K, Patwardhan A, Russell MRG, Saibil HR, Strambio-De-Castillia C, Swedlow JR, Tischer C, Uhlmann V, Verkade P, Barlow M, Bayraktar O, Birney E, Catavitello C, Cawthorne C, Wagner-Conrad S, Duke E, Paul-Gilloteaux P, Gustin E, Harkiolaki M, Kankaanpää P, Lemberger T, McEntyre J, Moore J, Nicholls AW, Onami S, Parkinson H, Parsons M, Romanchikova M, Sofroniew N, Swoger J, Utz N, Voortman LM, Wong F, Zhang P, Kleywegt GJ, Brazma A

Nature methods, 2021

doi:10.1038/s41592-021-01166-8.

Publisher Correction: LifeTime and improving European healthcare through cell-based interceptive medicine.

Rajewsky N, Almouzni G, Gorski SA, Aerts S, Amit I, Bertero MG, Bock C, Bredenoord AL, Cavalli G, Chiocca S, Clevers H, De Strooper B, Eggert A, Ellenberg J, Fernández XM, Figlerowicz M, Gasser SM, Hubner N, Kjems J, Knoblich JA, Krabbe G, Lichter P, Linnarsson S, Marine JC, Marioni JC, Marti-Renom MA, Netea MG, Nickel D, Nollmann M, Novak HR, Parkinson H, Piccolo S, Pinheiro I, Pombo A, Popp C, Reik W, Roman-Roman S, Rosenstiel P, Schultze JL, Stegle O, Tanay A, Testa G, Thanos D, Theis FJ, Torres-Padilla ME, Valencia A, Vallot C, van Oudenaarden A, Vidal M, Voet T, LifeTime Community Working Groups

Nature, 2021

doi:10.1038/s41586-021-03287-8.

Super-resolution spatial proximity detection with proximity-PAINT.

Schueder F, Lara-Gutiérrez J, Haas D, Beckwith KS, Yin P, Ellenberg J, Jungmann R

Angewandte Chemie (International ed. in English), 2020

doi:10.1002/anie.202009031.

Life time and improving European healthcare through cell-based interceptive medicine.

Rajewsky N, Almouzni G, Gorski SA, Aerts S, Amit I, Bertero MG, Bock C, Bredenoord AL, Cavalli G, Chiocca S, Clevers H, De Strooper B, Eggert A, Ellenberg J, Fernández XM, Figlerowicz M, Gasser SM, Hubner N, Kjems J, Knoblich JA, Krabbe G, Lichter P, Linnarsson S, Marine JC, Marioni J, Marti-Renom MA, Netea MG, Nickel D, Nollmann M, Novak HR, Parkinson H, Piccolo S, Pinheiro I, Pombo A, Popp C, Reik W, Roman-Roman S, Rosenstiel P, Schultze JL, Stegle O, Tanay A, Testa G, Thanos D, Theis FJ, Torres-Padilla ME, Valencia A, Vallot C, van Oudenaarden A, Vidal M, Voet T

Nature, 2020

doi:10.1038/s41586-020-2715-9.

Chemogenetic control of nanobodies.

Farrants H, Tarnawski M, Müller TG, Otsuka S, Hiblot J, Koch B, Kueblbeck M, Kräusslich HG, Ellenberg J, Johnsson K

Nature methods, 2020

doi:10.1038/s41592-020-0746-7.

MINFLUX nanoscopy delivers 3D multicolor nanometer resolution in cells.

Gwosch KC, Pape JK, Balzarotti F, Hoess P, Ellenberg J, Ries J, Hell SW

Nature methods, 2020

doi:10.1038/s41592-019-0688-0.

Nuclear pores as versatile reference standards for quantitative superresolution microscopy.

Thevathasan JV, Kahnwald M, Cieśliński K, Hoess P, Peneti SK, Reitberger M, Heid D, Kasuba KC, Hoerner SJ, Li Y, Wu YL, Mund M, Matti U, Pereira PM, Henriques R, Kueblbeck M, Nijmeijer B, Ellenberg J, Sabinina VJ, Ries J

Nature methods, 2019

doi:10.1038/s41592-019-0574-9.

Publisher correction: nuclear pores as versatile reference standards for quantitative superresolution microscopy.

Thevathasan JV, Kahnwald M, Cieśliński K, Hoess P, Peneti SK, Reitberger M, Heid D, Kasuba KC, Hoerner SJ, Li Y, Wu YL, Mund M, Matti U, Pereira PM, Henriques R, Kueblbeck M, Nijmeijer B, Ellenberg J, Sabinina VJ, Ries J

Nature methods, 2019

doi:10.1038/s41592-019-0659-5.

Photoactivation of silicon rhodamines via a light-induced protonation.

Frei MS, Hoess P, Lampe M, Nijmeijer B, Kueblbeck M, Ellenberg J, Wadepohl H, Ries J, Pitsch S, Reymond L, Johnsson K

NATURE COMMUNICATIONS, 2019

doi:10.1038/s41467-019-12480-3.

Direct visualization of single nuclear pore complex proteins using genetically-encoded probes for DNA-PAINT.

Schlichthaerle T, Strauss MT, Schueder F, Auer A, Nijmeijer B, Kueblbeck M, Sabinina VJ, Thevathasan JV, Ries J, Ellenberg J, Jungmann R

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2019

doi:10.1002/anie.201905685.

Determining cellular CTCF and cohesin abundances to constrain 3D genome models.

Cattoglio C, Pustova I, Walther N, Ho JJ, Hantsche-Grininger M, Inouye CJ, Hossain MJ, Dailey GM, Ellenberg J, Darzacq X, Tjian R, Hansen AS

eLife, 2019

doi:10.7554/eLife.40164.

Absolute quantification of cohesin, CTCF and their regulators in human cells.

Holzmann J, Politi AZ, Nagasaka K, Hantsche-Grininger M, Walther N, Koch B, Fuchs J, Dürnberger G, Tang W, Ladurner R, Stocsits RR, Busslinger GA, Novák B, Mechtler K, Davidson IF, Peters JM, Ellenberg J

eLife, 2019

doi:10.7554/eLife.46269.

Mysteries in embryonic development: how can errors arise so frequently at the beginning of mammalian life?

Schneider I, Ellenberg J

PLoS biology, 2019

doi:10.1371/journal.pbio.3000173.

Integrating imaging and omics: computational methods and challenges.

Heriche JK, Alexander S, Ellenberg J

ANNUAL REVIEW OF BIOMEDICAL DATA SCIENCE, VOL 2, 2019, 2019

doi:10.1146/annurev-biodatasci-080917-013328.

Gain of CTCF-anchored chromatin loops marks the exit from naive pluripotency.

Pękowska A, Klaus B, Xiang W, Severino J, Daigle N, Klein FA, Oleś M, Casellas R, Ellenberg J, Steinmetz LM, Bertone P, Huber W

Cell systems, 2018

doi:10.1016/j.cels.2018.09.003.

A call for public archives for biological image data.

Ellenberg J, Swedlow JR, Barlow M, Cook CE, Sarkans U, Patwardhan A, Brazma A, Birney E

Nature methods, 2018

doi:10.1038/s41592-018-0195-8.

Multivariate control of transcript to protein variability in single mammalian cells.

Popovic D, Koch B, Kueblbeck M, Ellenberg J, Pelkmans L

Cell systems, 2018

doi:10.1016/j.cels.2018.09.001.

Modified aptamers enable quantitative sub-10-nm cellular DNA-PAINT imaging.

Strauss S, Nickels PC, Strauss MT, Jimenez Sabinina V, Ellenberg J, Carter JD, Gupta S, Janjic N, Jungmann R

Nature methods, 2018

doi:10.1038/s41592-018-0105-0.

Experimental and computational framework for a dynamic protein atlas of human cell division.

Cai Y, Hossain MJ, Hériché JK, Politi AZ, Walther N, Koch B, Wachsmuth M, Nijmeijer B, Kueblbeck M, Martinic-Kavur M, Ladurner R, Alexander S, Peters JM, Ellenberg J

Nature, 2018

doi:10.1038/s41586-018-0518-z.

The replicative helicase MCM recruits cohesin acetyltransferase ESCO2 to mediate centromeric sister chromatid cohesion.

Ivanov MP, Ladurner R, Poser I, Beveridge R, Rampler E, Hudecz O, Novatchkova M, Hériché JK, Wutz G, van der Lelij P, Kreidl E, Hutchins JR, Axelsson-Ekker H, Ellenberg J, Hyman AA, Peters JM, Mechtler K

The EMBO journal, 2018

doi:10.15252/embj.201797150.

Dual-spindle formation in zygotes keeps parental genomes apart in early mammalian embryos.

Reichmann J, Nijmeijer B, Hossain MJ, Eguren M, Schneider I, Politi AZ, Roberti MJ, Hufnagel L, Hiiragi T, Ellenberg J

Science (New York, N.Y.), 2018

doi:10.1126/science.aar7462.

A quantitative map of human Condensins provides new insights into mitotic chromosome architecture.

Walther N, Hossain MJ, Politi AZ, Koch B, Kueblbeck M, Ødegård-Fougner Ø, Lampe M, Ellenberg J

The Journal of cell biology, 2018

doi:10.1083/jcb.201801048.

Generation and validation of homozygous fluorescent knock-in cells using CRISPR-Cas9 genome editing.

Koch B, Nijmeijer B, Kueblbeck M, Cai Y, Walther N, Ellenberg J

Nature protocols, 2018

doi:10.1038/nprot.2018.042.

Quantitative mapping of fluorescently tagged cellular proteins using FCS-calibrated four-dimensional imaging.

Politi AZ, Cai Y, Walther N, Hossain MJ, Koch B, Wachsmuth M, Ellenberg J

Nature protocols, 2018

doi:10.1038/nprot.2018.040.

iNEXT: a European facility network to stimulate translational structural biology.

iNEXT Consortium

FEBS letters, 2018

doi:10.1002/1873-3468.13062.

Correction: Correlative live and super-resolution imaging reveals the dynamic structure of replication domains.

Xiang W, Roberti MJ, Hériché JK, Huet S, Alexander S, Ellenberg J

The Journal of cell biology, 2018

doi:10.1083/JCB.20170907408082018c.

Correlative live and super-resolution imaging reveals the dynamic structure of replication domains.

Xiang W, Roberti MJ, Hériché JK, Huet S, Alexander S, Ellenberg J

The Journal of cell biology, 2018

doi:10.1083/jcb.201709074.

Real-time 3D single-molecule localization using experimental point spread functions.

Li Y, Mund M, Hoess P, Deschamps J, Matti U, Nijmeijer B, Sabinina VJ, Ellenberg J, Schoen I, Ries J

Nature methods, 2018

doi:10.1038/nmeth.4661.

Live imaging of cell division in preimplantation mouse embryos using inverted light-sheet microscopy.

Reichmann J, Eguren M, Lin Y, Schneider I, Ellenberg J

Methods in cell biology, 2018

doi:10.1016/bs.mcb.2018.03.030.

Quantitative live and super-resolution microscopy of mitotic chromosomes

Walther N, Ellenberg J

2018

doi:10.1016/bs.mcb.2018.03.014.

ChromoTrace: Computational reconstruction of 3D chromosome configurations for super-resolution microscopy.

Barton C, Morganella S, Ødegård-Fougner Ø, Alexander S, Ries J, Fitzgerald T, Ellenberg J, Birney E

PLoS computational biology, 2018

doi:10.1371/journal.pcbi.1006002.

Author Correction: Sister chromatid resolution is an intrinsic part of chromosome organization in prophase.

Nagasaka K, Hossain MJ, Roberti MJ, Ellenberg J, Hirota T

Nature cell biology, 2018

doi:10.1038/s41556-018-0044-0.

Mechanisms of nuclear pore complex assembly: Two different ways of building one molecular machine

Otsuka S, Ellenberg J

2017

doi:10.1002/1873-3468.12905.

Postmitotic nuclear pore assembly proceeds by radial dilation of small membrane openings

Otsuka S, Steyer AM, Schorb M, Hériché JK, Hossain MJ, Sethi S, Kueblbeck M, Schwab Y, Beck M, Ellenberg J

Nature Structural and Molecular Biology, 2017

doi:10.1038/s41594-017-0001-9.

Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins.

Wutz G, Várnai C, Nagasaka K, Cisneros DA, Stocsits RR, Tang W, Schoenfelder S, Jessberger G, Muhar M, Hossain MJ, Walther N, Koch B, Kueblbeck M, Ellenberg J, Zuber J, Fraser P, Peters JM

The EMBO journal, 2017

doi:10.15252/embj.201798004.

Real-Time Imaging of a Single Gene Reveals Transcription-Initiated Local Confinement.

Germier T, Kocanova S, Walther N, Bancaud A, Shaban HA, Sellou H, Politi AZ, Ellenberg J, Gallardo F, Bystricky K

Biophysical journal, 2017

doi:10.1016/j.bpj.2017.08.014.

Fast, robust and precise 3D localization for arbitrary point spread functions.

Yiming Li, Markus Mund, Philipp Hoess, Ulf Matti, Bianca Nijmeijer, Vilma Jimenez Sabinina, Jan Ellenberg, Ingmar Schoen, Jonas Ries

2017

doi:10.1101/172643.

Profiling DNA damage response following mitotic perturbations.

S Pedersen R, Karemore G, Gudjonsson T, Rask MB, Neumann B, Hériché JK, Pepperkok R, Ellenberg J, Gerlich DW, Lukas J, Lukas C

Nature communications, 2016

doi:10.1038/ncomms13887.

Nuclear pore assembly proceeds by an inside-out extrusion of the nuclear envelope

Otsuka S, Bui KH, Schorb M, Hossain MJ, Politi AZ, Koch B, Eltsov M, Beck M, Ellenberg J

eLife, 2016

doi:10.7554/eLife.19071.

A proposal for validation of antibodies.

Uhlen M, Bandrowski A, Carr S, Edwards A, Ellenberg J, Lundberg E, Rimm DL, Rodriguez H, Hiltke T, Snyder M, Yamamoto T

Nature methods, 2016

doi:10.1038/nmeth.3995.

Ki-67 acts as a biological surfactant to disperse mitotic chromosomes.

Cuylen S, Blaukopf C, Politi AZ, Müller-Reichert T, Neumann B, Poser I, Ellenberg J, Hyman AA, Gerlich DW

Nature, 2016

doi:10.1038/nature18610.

A protocol for the systematic and quantitative measurement of protein-lipid interactions using the liposome-microarray-based assay.

Saliba AE, Vonkova I, Deghou S, Ceschia S, Tischer C, Kugler KG, Bork P, Ellenberg J, Gavin AC

Nature protocols, 2016

doi:10.1038/nprot.2016.059.

The cellular microscopy phenotype ontology.

Jupp S, Malone J, Burdett T, Heriche JK, Williams E, Ellenberg J, Parkinson H, Rustici G

Journal of biomedical semantics, 2016

doi:10.1186/s13326-016-0074-0.

Sister chromatid resolution is an intrinsic part of chromosome organization in prophase.

Nagasaka K, Hossain MJ, Roberti MJ, Ellenberg J, Hirota T

Nature cell biology, 2016

doi:10.1038/ncb3353.

ARHGEF17 is an essential spindle assembly checkpoint factor that targets Mps1 to kinetochores.

Isokane M, Walter T, Mahen R, Nijmeijer B, Hériché JK, Miura K, Maffini S, Ivanov MP, Kitajima TS, Peters JM, Ellenberg J

The Journal of cell biology, 2016

doi:10.1083/jcb.201408089.

Inverted light-sheet microscope for imaging mouse pre-implantation development.

Strnad P, Gunther S, Reichmann J, Krzic U, Balazs B, de Medeiros G, Norlin N, Hiiragi T, Hufnagel L, Ellenberg J

Nature methods, 2015

doi:10.1038/nmeth.3690.

A cell-based model system links chromothripsis with hyperploidy.

Mardin BR, Drainas AP, Waszak SM, Weischenfeldt J, Isokane M, Stütz AM, Raeder B, Efthymiopoulos T, Buccitelli C, Segura-Wang M, Northcott P, Pfister SM, Lichter P, Ellenberg J, Korbel JO

Molecular systems biology, 2015

doi:10.15252/msb.20156505.

Lipid Cooperativity as a General Membrane-Recruitment Principle for PH Domains.

Vonkova I, Saliba AE, Deghou S, Anand K, Ceschia S, Doerks T, Galih A, Kugler KG, Maeda K, Rybin V, van Noort V, Ellenberg J, Bork P, Gavin AC

Cell reports, 2015

doi:10.1016/j.celrep.2015.07.054.

An actin-dependent spindle position checkpoint ensures the asymmetric division in mouse oocytes (Retraction of vol 6, 7784, 2015)

Metchat A, Eguren M, Hossain JM, Politi AZ, Huet S, Ellenberg J

NATURE COMMUNICATIONS, 2015

doi:10.1038/ncomms9124.

Live imaging and modeling of inner nuclear membrane targeting reveals its molecular requirements in mammalian cells.

Boni A, Politi AZ, Strnad P, Xiang W, Hossain MJ, Ellenberg J

The Journal of cell biology, 2015

doi:10.1083/jcb.201409133.

High-throughput fluorescence correlation spectroscopy enables analysis of proteome dynamics in living cells.

Wachsmuth M, Conrad C, Bulkescher J, Koch B, Mahen R, Isokane M, Pepperkok R, Ellenberg J

Nature biotechnology, 2015

doi:10.1038/nbt.3146.

FUN-L: Gene prioritization for RNAi screens.

Lees JG, Hériché JK, Morilla I, Fernández JM, Adler P, Krallinger M, Vilo J, Valencia A, Ellenberg J, Ranea JA, Orengo C

Bioinformatics (Oxford, England), 2015

doi:10.1093/bioinformatics/btv073.

Multiple Requirements of PLK1 during Mouse Oocyte Maturation.

Solc P, Kitajima TS, Yoshida S, Brzakova A, Kaido M, Baran V, Mayer A, Samalova P, Motlik J, Ellenberg J

PloS one, 2015

doi:10.1371/journal.pone.0116783.

SNW1 enables sister chromatid cohesion by mediating the splicing of sororin and APC2 pre-mRNAs

van der Lelij P, Stocsits RR, Ladurner R, Petzold G, Kreidl E, Koch B, Schmitz J, Neumann B, Ellenberg J, Peters JM

The EMBO journal, 2014

doi:10.15252/embj.201488202.

Comparative assessment of fluorescent transgene methods for quantitative imaging in human cells

Mahen R, Koch B, Wachsmuth M, Politi AZ, Perez-Gonzalez A, Mergenthaler J, Cai Y, Ellenberg J

Molecular biology of the cell, 2014

doi:10.1091/mbc.e14-06-1091.

Myo19 Ensures Symmetric Partitioning of Mitochondria and Coupling of Mitochondrial Segregation to Cell Division.

Rohn JL, Patel JV, Neumann B, Bulkescher J, Mchedlishvili N, McMullan RC, Quintero OA, Ellenberg J, Baum B

Current biology : CB, 2014

doi:10.1016/j.cub.2014.09.045.

MAP1S controls microtubule stability throughout the cell cycle in human cells.

Tegha-Dunghu J, Bausch E, Neumann B, Wuensche A, Walter T, Ellenberg J, Gruss OJ

Journal of cell science, 2014

doi:10.1242/jcs.136457.

Integration of biological data by kernels on graph nodes allows prediction of new genes involved in mitotic chromosome condensation

Hériché JK, Lees JG, Morilla I, Walter T, Petrova B, Roberti MJ, Hossain MJ, Adler P, Fernández JM, Krallinger M, Haering CH, Vilo J, Valencia A, Ranea JA, Orengo C, Ellenberg J

Molecular biology of the cell, 2014

doi:10.1091/mbc.e13-04-0221.

Mechanisms of HsSAS-6 assembly promoting centriole formation in human cells

Keller D, Orpinell M, Olivier N, Wachsmuth M, Mahen R, Wyss R, Hachet V, Ellenberg J, Manley S, Gönczy P

The Journal of cell biology, 2014

doi:10.1083/jcb.201307049.

Imaging the assembly, structure, and function of the nuclear pore inside cells.

Otsuka S, Szymborska A, Ellenberg J

Methods in cell biology, 2014

doi:10.1016/b978-0-12-417160-2.00010-2.

A quantitative liposome microarray to systematically characterize protein-lipid interactions

Saliba AE, Vonkova I, Ceschia S, Findlay GM, Maeda K, Tischer C, Deghou S, van Noort V, Bork P, Pawson T, Ellenberg J, Gavin AC

Nature methods, 2013

doi:10.1038/nmeth.2734.

Crowded chromatin is not sufficient for heterochromatin formation and not required for its maintenance

Walter A, Chapuis C, Huet S, Ellenberg J

Journal of structural biology, 2013

doi:10.1016/j.jsb.2013.10.004.

Wapl is an essential regulator of chromatin structure and chromosome segregation

Tedeschi A, Wutz G, Huet S, Jaritz M, Wuensche A, Schirghuber E, Davidson IF, Tang W, Cisneros DA, Bhaskara V, Nishiyama T, Vaziri A, Wutz A, Ellenberg J, Peters JM

Nature, 2013

doi:10.1038/nature12471.

Nuclear pore scaffold structure analyzed by super-resolution microscopy and particle averaging

Szymborska A, de Marco A, Daigle N, Cordes VC, Briggs JA, Ellenberg J

Science (New York, N.Y.), 2013

doi:10.1126/science.1240672.

EGF-induced centrosome separation promotes mitotic progression and cell survival

Mardin BR, Isokane M, Cosenza MR, Krämer A, Ellenberg J, Fry AM, Schiebel E

Developmental cell, 2013

doi:10.1016/j.devcel.2013.03.012.

Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay.

Pau G, Walter T, Neumann B, Hériché JK, Ellenberg J, Huber W

BMC bioinformatics, 2013

doi:10.1186/1471-2105-14-308.

A fractal model for nuclear organization: current evidence and biological implications

Bancaud A, Lavelle C, Huet S, Ellenberg J

Nucleic acids research, 2012

doi:10.1093/nar/gks586.

Mitotic lamin disassembly is triggered by lipid-mediated signaling

Mall M, Walter T, Gorjánácz M, Davidson IF, Nga Ly-Hartig TB, Ellenberg J, Mattaj IW

The Journal of cell biology, 2012

doi:10.1083/jcb.201205103.

The transition from meiotic to mitotic spindle assembly is gradual during early mammalian development

Courtois A, Schuh M, Ellenberg J, Hiiragi T

The Journal of cell biology, 2012

doi:10.1083/jcb.201202135.

Genome-wide RNAi screening identifies human proteins with a regulatory function in the early secretory pathway

Simpson JC, Joggerst B, Laketa V, Verissimo F, Cetin C, Erfle H, Bexiga MG, Singan VR, Hériché JK, Neumann B, Mateos A, Blake J, Bechtel S, Benes V, Wiemann S, Ellenberg J, Pepperkok R

Nature cell biology, 2012

doi:10.1038/ncb2510.

Nucleoporin NUP153 guards genome integrity by promoting nuclear import of 53BP1.

Moudry P, Lukas C, Macurek L, Neumann B, Heriche JK, Pepperkok R, Ellenberg J, Hodny Z, Lukas J, Bartek J

Cell death and differentiation, 2012

doi:10.1038/cdd.2011.150.

GTSE1 is a microtubule plus-end tracking protein that regulates EB1-dependent cell migration

Scolz M, Widlund PO, Piazza S, Bublik DR, Reber S, Peche LY, Ciani Y, Hubner N, Isokane M, Monte M, Ellenberg J, Hyman AA, Schneider C, Bird AW

PloS one, 2012

doi:10.1371/journal.pone.0051259.

Phenotypic profiling of the human genome reveals gene products involved in plasma membrane targeting of SRC kinases

Ritzerfeld J, Remmele S, Wang T, Temmerman K, Brügger B, Wegehingel S, Tournaviti S, Strating JR, Wieland FT, Neumann B, Ellenberg J, Lawerenz C, Hesser J, Erfle H, Pepperkok R, Nickel W

Genome research, 2011

doi:10.1101/gr.116087.110.

Complete kinetochore tracking reveals error-prone homologous chromosome biorientation in mammalian oocytes

Kitajima TS, Ohsugi M, Ellenberg J

Cell, 2011

doi:10.1016/j.cell.2011.07.031.

A system for imaging the regulatory noncoding Xist RNA in living mouse embryonic stem cells

Ng K, Daigle N, Bancaud A, Ohhata T, Humphreys P, Walker R, Ellenberg J, Wutz A

Molecular biology of the cell, 2011

doi:10.1091/mbc.e11-02-0146.

Automatic quantification of microtubule dynamics enables RNAi-screening of new mitotic spindle regulators

Sironi L, Solon J, Conrad C, Mayer TU, Brunner D, Ellenberg J

Cytoskeleton (Hoboken, N.J.), 2011

doi:10.1002/cm.20510.

Intracellular transport by an anchored homogeneously contracting F-actin meshwork

Mori M, Monnier N, Daigle N, Bathe M, Ellenberg J, Lénárt P

Current biology : CB, 2011

doi:10.1016/j.cub.2011.03.002.

A Nup133-dependent NPC-anchored network tethers centrosomes to the nuclear envelope in prophase

Bolhy S, Bouhlel I, Dultz E, Nayak T, Zuccolo M, Gatti X, Vallee R, Ellenberg J, Doye V

The Journal of cell biology, 2011

doi:10.1083/jcb.201007118.

Micropilot: automation of fluorescence microscopy-based imaging for systems biology

Conrad C, Wünsche A, Tan TH, Bulkescher J, Sieckmann F, Verissimo F, Edelstein A, Walter T, Liebel U, Pepperkok R, Ellenberg J

Nature methods, 2011

doi:10.1038/nmeth.1558.

The quantitative proteome of a human cell line

Beck M, Schmidt A, Malmstroem J, Claassen M, Ori A, Szymborska A, Herzog F, Rinner O, Ellenberg J, Aebersold R

Molecular systems biology, 2011

doi:10.1038/msb.2011.82.

Mitotic Lamin disassembly is triggered by a lipid-mediated mitotic Lipin signaling pathway

Mall M, Walter T, Gorjanacz M, Ellenberg J, Mattaj IW

MOLECULAR BIOLOGY OF THE CELL, 2011

doi:.

Fluorescence perturbation techniques to study mobility and molecular dynamics of proteins in live cells: FRAP, photoactivation, photoconversion, and FLIP

Bancaud A, Huet S, Rabut G, Ellenberg J

Cold Spring Harbor protocols, 2010

doi:10.1101/pdb.top90.

The protein phosphatase 1 regulator PNUTS is a new component of the DNA damage response

Landsverk HB, Mora-Bermúdez F, Landsverk OJ, Hasvold G, Naderi S, Bakke O, Ellenberg J, Collas P, Syljuåsen RG, Küntziger T

EMBO reports, 2010

doi:10.1038/embor.2010.134.

Live imaging of single nuclear pores reveals unique assembly kinetics and mechanism in interphase

Dultz E, Ellenberg J

The Journal of cell biology, 2010

doi:10.1083/jcb.201007076.

CellCognition: time-resolved phenotype annotation in high-throughput live cell imaging.

Held M, Schmitz MH, Fischer B, Walter T, Neumann B, Olma MH, Peter M, Ellenberg J, Gerlich DW

Nature methods, 2010

doi:10.1038/nmeth.1486.

High-throughput microscopy using live mammalian cells.

Terjung S, Walter T, Seitz A, Neumann B, Pepperkok R, Ellenberg J

Cold Spring Harbor protocols, 2010

doi:10.1101/pdb.top84.

Systematic analysis of human protein complexes identifies chromosome segregation proteins

Hutchins JR, Toyoda Y, Hegemann B, Poser I, Hériché JK, Sykora MM, Augsburg M, Hudecz O, Buschhorn BA, Bulkescher J, Conrad C, Comartin D, Schleiffer A, Sarov M, Pozniakovsky A, Slabicki MM, Schloissnig S, Steinmacher I, Leuschner M, Ssykor A, Lawo S, Pelletier L, Stark H, Nasmyth K, Ellenberg J, Durbin R, Buchholz F, Mechtler K, Hyman AA, Peters JM

Science (New York, N.Y.), 2010

doi:10.1126/science.1181348.

Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes

Neumann B, Walter T, Hériché JK, Bulkescher J, Erfle H, Conrad C, Rogers P, Poser I, Held M, Liebel U, Cetin C, Sieckmann F, Pau G, Kabbe R, Wünsche A, Satagopam V, Schmitz MH, Chapuis C, Gerlich DW, Schneider R, Eils R, Huber W, Peters JM, Hyman AA, Durbin R, Pepperkok R, Ellenberg J

Nature, 2010

doi:10.1038/nature08869.

Automatic identification and clustering of chromosome phenotypes in a genome wide RNAi screen by time-lapse imaging

Walter T, Held M, Neumann B, Hériché JK, Conrad C, Pepperkok R, Ellenberg J

Journal of structural biology, 2010

doi:10.1016/j.jsb.2009.10.004.

Visualization of image data from cells to organisms

Walter T, Shattuck DW, Baldock R, Bastin ME, Carpenter AE, Duce S, Ellenberg J, Fraser A, Hamilton N, Pieper S, Ragan MA, Schneider JE, Tomancak P, Hériché JK

Nature methods, 2010

doi:10.1038/nmeth.1431.

Nuclear import and assembly of influenza A virus RNA polymerase studied in live cells by fluorescence cross-correlation spectroscopy

Huet S, Avilov SV, Ferbitz L, Daigle N, Cusack S, Ellenberg J

Journal of virology, 2010

doi:10.1128/jvi.01533-09.

Molecular crowding affects diffusion and binding of nuclear proteins in heterochromatin and reveals the fractal organization of chromatin

Bancaud A, Huet S, Daigle N, Mozziconacci J, Beaudouin J, Ellenberg J

The EMBO journal, 2009

doi:10.1038/emboj.2009.340.

Automatic analysis of dividing cells in live cell movies to detect mitotic delays and correlate phenotypes in time

Harder N, Mora-Bermúdez F, Godinez WJ, Wünsche A, Eils R, Ellenberg J, Rohr K

Genome research, 2009

doi:10.1101/gr.092494.109.

Formation of the nuclear envelope permeability barrier studied by sequential photoswitching and flux analysis

Dultz E, Huet S, Ellenberg J

Biophysical journal, 2009

doi:10.1016/j.bpj.2009.07.024.

RNF168 binds and amplifies ubiquitin conjugates on damaged chromosomes to allow accumulation of repair proteins

Doil C, Mailand N, Bekker-Jensen S, Menard P, Larsen DH, Pepperkok R, Ellenberg J, Panier S, Durocher D, Bartek J, Lukas J, Lukas C

Cell, 2009

doi:10.1016/j.cell.2008.12.041.

Chromophore-assisted laser inactivation of alpha- and gamma-tubulin SNAP-tag fusion proteins inside living cells

Keppler A, Ellenberg J

ACS chemical biology, 2009

doi:10.1021/cb800298u.

Sun1 forms immobile macromolecular assemblies at the nuclear envelope

Lu W, Gotzmann J, Sironi L, Jaeger VM, Schneider M, Lüke Y, Uhlén M, Szigyarto CA, Brachner A, Ellenberg J, Foisner R, Noegel AA, Karakesisoglou I

Biochimica et biophysica acta, 2008

doi:10.1016/j.bbamcr.2008.09.001.

A new model for asymmetric spindle positioning in mouse oocytes

Schuh M, Ellenberg J

Current biology : CB, 2008

doi:10.1016/j.cub.2008.11.022.

Work flow for multiplexing siRNA assays by solid-phase reverse transfection in multiwell plates

Erfle H, Neumann B, Rogers P, Bulkescher J, Ellenberg J, Pepperkok R

Journal of biomolecular screening, 2008

doi:10.1177/1087057108320133.

Nuclear pore complex assembly through the cell cycle: regulation and membrane organization

Antonin W, Ellenberg J, Dultz E

FEBS letters, 2008

doi:10.1016/j.febslet.2008.02.067.

EML3 is a nuclear microtubule-binding protein required for the correct alignment of chromosomes in metaphase.

Tegha-Dunghu J, Neumann B, Reber S, Krause R, Erfle H, Walter T, Held M, Rogers P, Hupfeld K, Ruppert T, Ellenberg J, Gruss OJ

Journal of cell science, 2008

doi:10.1242/jcs.019174.

Systematic kinetic analysis of mitotic dis- and reassembly of the nuclear pore in living cells

Dultz E, Zanin E, Wurzenberger C, Braun M, Rabut G, Sironi L, Ellenberg J

The Journal of cell biology, 2008

doi:10.1083/jcb.200707026.

A genome wide RNAI screen by time lapse microscopy in order to identify mitotic genes - Computational aspects and challenges.

Walter T, Held M, Neumann B, Heriche JK, Conrad C, Pepperkok R, Ellenberg J

2008 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO, VOLS 1-4, 2008

doi:10.1109/ISBI.2008.4540999.

LambdaN-GFP: an RNA reporter system for live-cell imaging

Daigle N, Ellenberg J

Nature methods, 2007

doi:10.1038/nmeth1065.

Self-organization of MTOCs replaces centrosome function during acentrosomal spindle assembly in live mouse oocytes

Schuh M, Ellenberg J

Cell, 2007

doi:10.1016/j.cell.2007.06.025.

Maximal chromosome compaction occurs by axial shortening in anaphase and depends on Aurora kinase

Mora-Bermúdez F, Gerlich D, Ellenberg J

Nature cell biology, 2007

doi:10.1038/ncb1606.

An RNAi screening platform to identify secretion machinery in mammalian cells

Simpson JC, Cetin C, Erfle H, Joggerst B, Liebel U, Ellenberg J, Pepperkok R

Journal of biotechnology, 2007

doi:10.1016/j.jbiotec.2006.12.027.

Nuclear envelope

Dultz E, Ellenberg J

CURRENT BIOLOGY, 2007

doi:10.1016/j.cub.2006.12.035.

Structure and nuclear import function of the C-terminal domain of influenza virus polymerase PB2 subunit

Tarendeau F, Boudet J, Guilligay D, Mas PJ, Bougault CM, Boulo S, Baudin F, Ruigrok RW, Daigle N, Ellenberg J, Cusack S, Simorre JP, Hart DJ

Nature structural & molecular biology, 2007

doi:10.1038/nsmb1212.

Measuring structural dynamics of chromosomes in living cells by fluorescence microscopy

Mora-Bermúdez F, Ellenberg J

Methods (San Diego, Calif.), 2007

doi:10.1016/j.ymeth.2006.07.035.

Reverse transfection on cell arrays for high content screening microscopy.

Erfle H, Neumann B, Liebel U, Rogers P, Held M, Walter T, Ellenberg J, Pepperkok R

Nature protocols, 2007

doi:10.1038/nprot.2006.483.

Minimizing the risk of reporting false positives in large-scale RNAi screens

Echeverri CJ, Beachy PA, Baum B, Boutros M, Buchholz F, Chanda SK, Downward J, Ellenberg J, Fraser AG, Hacohen N, Hahn WC, Jackson AL, Kiger A, Linsley PS, Lum L, Ma Y, Mathey-Prévôt B, Root DE, Sabatini DM, Taipale J, Perrimon N, Bernards R

Nature methods, 2006

doi:10.1038/nmeth1006-777.

High-throughput fluorescence microscopy for systems biology

Pepperkok R, Ellenberg J

Nature reviews. Molecular cell biology, 2006

doi:10.1038/nrm1979.

Live-cell imaging reveals a stable cohesin-chromatin interaction after but not before DNA replication

Gerlich D, Koch B, Dupeux F, Peters JM, Ellenberg J

Current biology : CB, 2006

doi:10.1016/j.cub.2006.06.068.

Fluorophores for live cell imaging of AGT fusion proteins across the visible spectrum

Keppler A, Arrivoli C, Sironi L, Ellenberg J

BioTechniques, 2006

doi:10.2144/000112216.

Resolution of chiasmata in oocytes requires separase-mediated proteolysis

Kudo NR, Wassmann K, Anger M, Schuh M, Wirth KG, Xu H, Helmhart W, Kudo H, McKay M, Maro B, Ellenberg J, de Boer P, Nasmyth K

Cell, 2006

doi:10.1016/j.cell.2006.05.033.

NuSAP, a mitotic RanGTP target that stabilizes and cross-links microtubules

Ribbeck K, Groen AC, Santarella R, Bohnsack MT, Raemaekers T, Köcher T, Gentzel M, Görlich D, Wilm M, Carmeliet G, Mitchison TJ, Ellenberg J, Hoenger A, Mattaj IW

Molecular biology of the cell, 2006

doi:10.1091/mbc.e05-12-1178.

High-throughput RNAi screening by time-lapse imaging of live human cells.

Neumann B, Held M, Liebel U, Erfle H, Rogers P, Pepperkok R, Ellenberg J

Nature methods, 2006

doi:10.1038/nmeth876.

Nuclear actin: a lack of export allows formation of filaments

Schuh M, Ellenberg J

Current biology : CB, 2006

doi:10.1016/j.cub.2006.03.081.

Dissecting the contribution of diffusion and interactions to the mobility of nuclear proteins

Beaudouin J, Mora-Bermúdez F, Klee T, Daigle N, Ellenberg J

Biophysical journal, 2006

doi:10.1529/biophysj.105.071241.

Condensin I stabilizes chromosomes mechanically through a dynamic interaction in live cells

Gerlich D, Hirota T, Koch B, Peters JM, Ellenberg J

Current biology : CB, 2006

doi:10.1016/j.cub.2005.12.040.

Monitoring the permeability of the nuclear envelope during the cell cycle

Lénárt P, Ellenberg J

Methods (San Diego, Calif.), 2006

doi:10.1016/j.ymeth.2005.07.010.

Time-lapse microscopy-based genome wide RNAI screening in live human cells.

Neumann B, Held M, Liebel U, Erfle H, Rogers P, Pepperkok R, Ellenberg J

2006 3RD IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: MACRO TO NANO, VOLS 1-3, 2006

doi:10.1109/ISBI.2006.1624898.

FRET analyses of the U2AF complex localize the U2AF35/U2AF65 interaction in vivo and reveal a novel self-interaction of U2AF35

Chusainow J, Ajuh PM, Trinkle-Mulcahy L, Sleeman JE, Ellenberg J, Lamond AI

RNA (New York, N.Y.), 2005

doi:10.1261/rna.7277705.

A contractile nuclear actin network drives chromosome congression in oocytes

Lénárt P, Bacher CP, Daigle N, Hand AR, Eils R, Terasaki M, Ellenberg J

Nature, 2005

doi:10.1038/nature03810.

Photobleaching techniques to study mobility and molecular dynamics of proteins in live cells: FRAP, iFRAP and FLIP

Rabut G, Ellenberg, J

2005

doi:.

LAP2alpha and BAF transiently localize to telomeres and specific regions on chromatin during nuclear assembly

Dechat T, Gajewski A, Korbei B, Gerlich D, Daigle N, Haraguchi T, Furukawa K, Ellenberg J, Foisner R

Journal of cell science, 2004

doi:10.1242/jcs.01529.

Distinct functions of condensin I and II in mitotic chromosome assembly

Hirota T, Gerlich D, Koch B, Ellenberg J, Peters JM

Journal of cell science, 2004

doi:10.1242/jcs.01604.

Mapping the dynamic organization of the nuclear pore complex inside single living cells

Rabut G, Doye V, Ellenberg J

Nature cell biology, 2004

doi:10.1038/ncb1184.

Automatic real-time three-dimensional cell tracking by fluorescence microscopy

Rabut G, Ellenberg J

Journal of microscopy, 2004

doi:10.1111/j.0022-2720.2004.01404.x.

Hypophosphorylated SR splicing factors transiently localize around active nucleolar organizing regions in telophase daughter nuclei

Bubulya PA, Prasanth KV, Deerinck TJ, Gerlich D, Beaudouin J, Ellisman MH, Ellenberg J, Spector DL

The Journal of cell biology, 2004

doi:10.1083/jcb.200404120.

Roles of polo-like kinase 1 in the assembly of functional mitotic spindles

Sumara I, Giménez-Abián JF, Gerlich D, Hirota T, Kraft C, de la Torre C, Ellenberg J, Peters JM

Current biology : CB, 2004

doi:10.1016/j.cub.2004.09.049.

Quantitative kinetic analysis of nucleolar breakdown and reassembly during mitosis in live human cells

Leung AK, Gerlich D, Miller G, Lyon C, Lam YW, Lleres D, Daigle N, Zomerdijk J, Ellenberg J, Lamond AI

The Journal of cell biology, 2004

doi:10.1083/jcb.200405013.

Calcium rises locally trigger focal adhesion disassembly and enhance residency of focal adhesion kinase at focal adhesions

Giannone G, Rondé P, Gaire M, Beaudouin J, Haiech J, Ellenberg J, Takeda K

The Journal of biological chemistry, 2004

doi:10.1074/jbc.m404054200.

Regulation of sister chromatid cohesion between chromosome arms

Giménez-Abián JF, Sumara I, Hirota T, Hauf S, Gerlich D, de la Torre C, Ellenberg J, Peters JM

Current biology : CB, 2004

doi:10.1016/j.cub.2004.06.052.

The entire Nup107-160 complex, including three new members, is targeted as one entity to kinetochores in mitosis

Loïodice I, Alves A, Rabut G, Van Overbeek M, Ellenberg J, Sibarita JB, Doye V

Molecular biology of the cell, 2004

doi:10.1091/mbc.e03-12-0878.

Automatic identification of subcellular phenotypes on human cell arrays

Conrad C, Erfle H, Warnat P, Daigle N, Lörch T, Ellenberg J, Pepperkok R, Eils R

Genome research, 2004

doi:10.1101/gr.2383804.

Dynamics of nuclear pore complex organization through the cell cycle

Rabut G, Lénárt P, Ellenberg J

Current opinion in cell biology, 2004

doi:10.1016/j.ceb.2004.04.001.

RanBP2/Nup358 provides a major binding site for NXF1-p15 dimers at the nuclear pore complex and functions in nuclear mRNA export

Forler D, Rabut G, Ciccarelli FD, Herold A, Köcher T, Niggeweg R, Bork P, Ellenberg J, Izaurralde E

Molecular and cellular biology, 2004

doi:10.1128/mcb.24.3.1155-1167.2004.

Light microscopy of echinoderm embryos

Strickland L, von Dassow G, Ellenberg J, Foe V, Lenart P, Burgess D

Methods in cell biology, 2004

doi:10.1016/S0091-679X(04)74016-9.

Dynamics of chromosome positioning during the cell cycle

Gerlich D, Ellenberg J

Current opinion in cell biology, 2003

doi:10.1016/j.ceb.2003.10.014.

4D imaging to assay complex dynamics in live specimens

Gerlich D, Ellenberg J

Nature cell biology, 2003

doi:.

NuSAP, a novel microtubule-associated protein involved in mitotic spindle organization

Raemaekers T, Ribbeck K, Beaudouin J, Annaert W, Van Camp M, Stockmans I, Smets N, Bouillon R, Ellenberg J, Carmeliet G

The Journal of cell biology, 2003

doi:10.1083/jcb.200302129.

Global chromosome positions are transmitted through mitosis in mammalian cells

Gerlich D, Beaudouin J, Kalbfuss B, Daigle N, Eils R, Ellenberg J

Cell, 2003

doi:10.1016/s0092-8674(03)00189-2.

Nuclear envelope breakdown in starfish oocytes proceeds by partial NPC disassembly followed by a rapidly spreading fenestration of nuclear membranes

Lénárt P, Rabut G, Daigle N, Hand AR, Terasaki M, Ellenberg J

The Journal of cell biology, 2003

doi:10.1083/jcb.200211076.

Cyclic, proteasome-mediated turnover of unliganded and liganded ERalpha on responsive promoters is an integral feature of estrogen signaling

Reid G, Hübner MR, Métivier R, Brand H, Denger S, Manu D, Beaudouin J, Ellenberg J, Gannon F

Molecular cell, 2003

doi:10.1016/s1097-2765(03)00090-x.

Nuclear envelope dynamics in oocytes: from germinal vesicle breakdown to mitosis

Lénárt P, Ellenberg J

Current opinion in cell biology, 2003

doi:10.1016/s0955-0674(02)00011-x.

Chromosomal association of Ran during meiotic and mitotic divisions

Hinkle B, Slepchenko B, Rolls MM, Walther TC, Stein PA, Mehlmann LM, Ellenberg J, Terasaki M

Journal of cell science, 2002

doi:10.1242/jcs.00136.

Ribonucleoprotein-dependent localization of the yeast class V myosin Myo4p

Kruse C, Jaedicke A, Beaudouin J, Bohl F, Ferring D, Guttler T, Ellenberg J, Jansen RP

The Journal of cell biology, 2002

doi:10.1083/jcb.200207101.

Remodelling the walls of the nucleus

Burke B, Ellenberg J

Nature reviews. Molecular cell biology, 2002

doi:10.1038/nrm860.

Dynamics of nuclear envelope proteins during the cell cycle in mammalian cells

Ellenberg J

2002

doi:.

Histone H3 phosphorylation during Xenopus oocyte maturation: regulation by the MAP kinase/p90Rsk pathway and uncoupling from DNA condensation

Schmitt A, Gutierrez GJ, Lénárt P, Ellenberg J, Nebreda AR

FEBS letters, 2002

doi:10.1016/s0014-5793(02)02630-3.

Nuclear envelope breakdown proceeds by microtubule-induced tearing of the lamina

Beaudouin J, Gerlich D, Daigle N, Eils R, Ellenberg J

Cell, 2002

doi:10.1016/s0092-8674(01)00627-4.

An evolutionarily conserved NPC subcomplex, which redistributes in part to kinetochores in mammalian cells

Belgareh N, Rabut G, Baï SW, van Overbeek M, Beaudouin J, Daigle N, Zatsepina OV, Pasteau F, Labas V, Fromont-Racine M, Ellenberg J, Doye V

The Journal of cell biology, 2001

doi:10.1083/jcb.200101081.

Four-dimensional imaging and quantitative reconstruction to analyse complex spatiotemporal processes in live cells

Gerlich D, Beaudouin J, Gebhard M, Ellenberg J, Eils R

Nature cell biology, 2001

doi:10.1038/ncb0901-852.

Nuclear pore complexes form immobile networks and have a very low turnover in live mammalian cells

Daigle N, Beaudouin J, Hartnell L, Imreh G, Hallberg E, Lippincott-Schwartz J, Ellenberg J

The Journal of cell biology, 2001

doi:10.1083/jcb.200101089.

Nucleocytoplasmic transport: diffusion channel or phase transition?

Rabut G, Ellenberg J

Current biology : CB, 2001

doi:10.1016/s0960-9822(01)00340-2.

A new model for nuclear envelope breakdown

Terasaki M, Campagnola P, Rolls MM, Stein PA, Ellenberg J, Hinkle B, Slepchenko B

Molecular biology of the cell, 2001

doi:10.1091/mbc.12.2.503.

A bromodomain protein, MCAP, associates with mitotic chromosomes and affects G(2)-to-M transition

Dey A, Ellenberg J, Farina A, Coleman AE, Maruyama T, Sciortino S, Lippincott-Schwartz J, Ozato K

Molecular and cellular biology, 2000

doi:10.1128/mcb.20.17.6537-6549.2000.

Dynamics and retention of misfolded proteins in native ER membranes

Nehls S, Snapp EL, Cole NB, Zaal KJ, Kenworthy AK, Roberts TH, Ellenberg J, Presley JF, Siggia E, Lippincott-Schwartz J

Nature cell biology, 2000

doi:10.1038/35010558.

Golgi membranes are absorbed into and reemerge from the ER during mitosis

Zaal KJ, Smith CL, Polishchuk RS, Altan N, Cole NB, Ellenberg J, Hirschberg K, Presley JF, Roberts TH, Siggia E, Phair RD, Lippincott-Schwartz J

Cell, 1999

doi:10.1016/s0092-8674(00)81548-2.

Dynamics and mobility of nuclear envelope proteins in interphase and mitotic cells revealed by green fluorescent protein chimeras

Ellenberg J, Lippincott-Schwartz J

Methods (San Diego, Calif.), 1999

doi:10.1006/meth.1999.0872.

Intracellular trafficking of emerin, the Emery-Dreifuss muscular dystrophy protein

Ostlund C, Ellenberg J, Hallberg E, Lippincott-Schwartz J, Worman HJ

Journal of cell science, 1999

doi:.

Dual-colour imaging with GFP variants

Ellenberg J, Lippincott-Schwartz J, Presley JF

Trends in cell biology, 1999

doi:10.1016/s0962-8924(98)01420-2.

Monitoring the dynamics and mobility of membrane proteins tagged with green fluorescent protein

Lippincott-Schwartz J, Presley JF, Zaal KJ, Hirschberg K, Miller CD, Ellenberg J

Methods in cell biology, 1999

doi:.

Kinetic analysis of secretory protein traffic and characterization of golgi to plasma membrane transport intermediates in living cells

Hirschberg K, Miller CM, Ellenberg J, Presley JF, Siggia ED, Phair RD, Lippincott-Schwartz J

The Journal of cell biology, 1998

doi:10.1083/jcb.143.6.1485.

Two-color green fluorescent protein time-lapse imaging

Ellenberg J, Lippincott-Schwartz J, Presley JF

BioTechniques, 1998

doi:10.2144/98255bt01.

ZAP-70 association with T cell receptor zeta (TCRzeta): fluorescence imaging of dynamic changes upon cellular stimulation

Sloan-Lancaster J, Presley J, Ellenberg J, Yamazaki T, Lippincott-Schwartz J, Samelson LE

The Journal of cell biology, 1998

doi:10.1083/jcb.143.3.613.

Retrograde transport of Golgi-localized proteins to the ER

Cole NB, Ellenberg J, Song J, DiEuliis D, Lippincott-Schwartz J

The Journal of cell biology, 1998

doi:10.1083/jcb.140.1.1.

Nuclear membrane dynamics and reassembly in living cells: targeting of an inner nuclear membrane protein in interphase and mitosis

Ellenberg J, Siggia ED, Moreira JE, Smith CL, Presley JF, Worman HJ, Lippincott-Schwartz J

The Journal of cell biology, 1997

doi:10.1083/jcb.138.6.1193.

Fluorescence photobleaching techniques

Ellenberg J, Lippincott-Schwartz J

1997

doi:.

The transmembrane domain of a carboxyl-terminal anchored protein determines localization to the endoplasmic reticulum

Yang M, Ellenberg J, Bonifacino JS, Weissman AM

The Journal of biological chemistry, 1997

doi:10.1074/jbc.272.37.23000.

Cloning and electrophysiological analysis of KST1, an inward rectifying K+ channel expressed in potato guard cells.

Müller-Röber B, Ellenberg J, Provart N, Willmitzer L, Busch H, Becker D, Dietrich P, Hoth S, Hedrich R

The EMBO journal, 1995

doi:10.1002/j.1460-2075.1995.tb07238.x.