Publications – Furlong Group

Enhancer-promoter interactions become more instructive in the transition from cell-fate specification to tissue differentiation.

Pollex T, Rabinowitz A, Gambetta MC, Marco-Ferreres R, Viales RR, Jankowski A, Schaub C, Furlong EEM

Nature genetics, 2024

doi:10.1038/s41588-024-01678-x.

Targeted design of synthetic enhancers for selected tissues in the Drosophila embryo.

de Almeida BP, Schaub C, Pagani M, Secchia S, Furlong EEM, Stark A

Nature, 2023

doi:10.1038/s41586-023-06905-9.

In vivo silencing of regulatory elements using a single AAV-CRISPRi vector.

Laurette P, Cao C, Ramanujam D, Schwaderer M, Lueneburg T, Kuss S, Weiss L, Dilshat R, Furlong EEM, Rezende F, Engelhardt S, Gilsbach R

Circulation research, 2023

doi:10.1161/circresaha.123.323854.

Chromatin gene-gene loops support the cross-regulation of genes with related function.

Pollex T, Marco-Ferreres R, Ciglar L, Ghavi-Helm Y, Rabinowitz A, Viales RR, Schaub C, Jankowski A, Girardot C, Furlong EEM

Molecular cell, 2023

doi:10.1016/j.molcel.2023.12.023.

CTCF, BEAF-32, and CP190 are not required for the establishment of TADs in early Drosophila embryos but have locus-specific roles.

Cavalheiro GR, Girardot C, Viales RR, Pollex T, Cao TBN, Lacour P, Feng S, Rabinowitz A, Furlong EEM

Science advances, 2023

doi:10.1126/sciadv.ade1085.

Enhancers have more cofactor specificity than we think: a potential new way to classify enhancers based on their functional cofactor requirements.

Pijuan-Sala B, Furlong EEM

Molecular cell, 2022

doi:10.1016/j.molcel.2022.07.015.

The continuum of Drosophila embryonic development at single-cell resolution.

Calderon D, Blecher-Gonen R, Huang X, Secchia S, Kentro J, Daza RM, Martin B, Dulja A, Schaub C, Trapnell C, Larschan E, O'Connor-Giles KM, Furlong EEM, Shendure J

Science (New York, N.Y.), 2022

doi:10.1126/science.abn5800.

Regulating specificity in enhancer-promoter communication.

Galouzis CC, Furlong EEM

Current opinion in cell biology, 2022

doi:10.1016/j.ceb.2022.01.010.

Simultaneous cellular and molecular phenotyping of embryonic mutants using single-cell regulatory trajectories.

Secchia S, Forneris M, Heinen T, Stegle O, Furlong EEM

Developmental cell, 2022

doi:10.1016/j.devcel.2022.01.016.

scDALI: modeling allelic heterogeneity in single cells reveals context-specific genetic regulation.

Heinen T, Secchia S, Reddington JP, Zhao B, Furlong EEM, Stegle O

Genome biology, 2022

doi:10.1186/s13059-021-02593-8.

Chromatin accessibility profiling methods.

Minnoye L, Marinov GK, Krausgruber T, Pan L, Marand AP, Secchia S, Greenleaf WJ, Furlong EEM, Zhao K, Schmitz RJ, Bock C, Aerts S

Nature reviews. Methods primers, 2021

doi:10.1038/s43586-020-00008-9.

Extremely rapid and reversible optogenetic perturbation of nuclear proteins in living embryos.

Kögler AC, Kherdjemil Y, Bender K, Rabinowitz A, Marco-Ferreres R, Furlong EEM

Developmental cell, 2021

doi:10.1016/j.devcel.2021.07.011.

The hourglass model of evolutionary conservation during embryogenesis extends to developmental enhancers with signatures of positive selection.

Liu J, Viales RR, Khoueiry P, Reddington JP, Girardot C, Furlong E, Robinson-Rechavi M

Genome research, 2021

doi:10.1101/gr.275212.121.

To loop or not to loop: what is the role of TADs in enhancer function and gene regulation?

Cavalheiro GR, Pollex T, Furlong EE

Current opinion in genetics & development, 2021

doi:10.1016/j.gde.2020.12.015.

Cis-acting variation is common across regulatory layers but is often buffered during embryonic development.

Floc'hlay S, Wong E, Zhao B, Viales RR, Thomas-Chollier M, Thieffry D, Garfield DA, Furlong EEM

Genome research, 2020

doi:10.1101/gr.266338.120.

Lineage-resolved enhancer and promoter usage during a time course of embryogenesis.

Reddington JP, Garfield DA, Sigalova OM, Karabacak Calviello A, Marco-Ferreres R, Girardot C, Viales RR, Degner JF, Ohler U, Furlong EEM

Developmental cell, 2020

doi:10.1016/j.devcel.2020.10.009.

Predictive features of gene expression variation reveal mechanistic link with differential expression.

Sigalova OM, Shaeiri A, Forneris M, Furlong EE, Zaugg JB

Molecular systems biology, 2020

doi:10.15252/msb.20209539.

The road ahead in genetics and genomics.

McGuire AL, Gabriel S, Tishkoff SA, Wonkam A, Chakravarti A, Furlong EEM, Treutlein B, Meissner A, Chang HY, López-Bigas N, Segal E, Kim JS

Nature reviews. Genetics, 2020

doi:10.1038/s41576-020-0272-6.

Characterization of button loci that promote homologous chromosome pairing and cell-type-specific interchromosomal gene regulation.

Viets K, Sauria MEG, Chernoff C, Rodriguez Viales R, Echterling M, Anderson C, Tran S, Dove A, Goyal R, Voortman L, Gordus A, Furlong EEM, Taylor J, Johnston RJ

Developmental cell, 2019

doi:10.1016/j.devcel.2019.09.007.

Chromatin topology, condensates and gene regulation: shifting paradigms or just a phase?

Mir M, Bickmore W, Furlong EEM, Narlikar G

Development (Cambridge, England), 2019

doi:10.1242/dev.182766.

Accurate genome-wide predictions of spatio-temporal gene expression during embryonic development.

Zhou J, Schor IE, Yao V, Theesfeld CL, Marco-Ferreres R, Tadych A, Furlong EEM, Troyanskaya OG

PLoS genetics, 2019

doi:10.1371/journal.pgen.1008382.

Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression.

Ghavi-Helm Y, Jankowski A, Meiers S, Viales RR, Korbel JO, Furlong EEM

Nature genetics, 2019

doi:10.1038/s41588-019-0462-3.

BRD4 bimodal binding at promoters and drug-induced displacement at Pol II pause sites associates with I-BET sensitivity.

Khoueiry P, Ward Gahlawat A, Petretich M, Michon AM, Simola D, Lam E, Furlong EE, Benes V, Dawson MA, Prinjha RK, Drewes G, Grandi P

Epigenetics & chromatin, 2019

doi:10.1186/s13072-019-0286-5.

The role of chromatin accessibility in cis-regulatory evolution.

Peng PC, Khoueiry P, Girardot C, Reddington JP, Garfield DA, Furlong EEM, Sinha S

Genome biology and evolution, 2019

doi:10.1093/gbe/evz103.

Expanding the mesodermal transcriptional network by genome-wide identification of Zinc finger homeodomain 1 (Zfh1) targets.

Wu WH, Kuo TH, Kao CW, Girardot C, Hung SJ, Liu T, Furlong EEM, Liu YH

FEBS letters, 2019

doi:10.1002/1873-3468.13443.

The role of transcription in shaping the spatial organization of the genome.

van Steensel B, Furlong EEM

Nature reviews. Molecular cell biology, 2019

doi:10.1038/s41580-019-0114-6.

Non-coding RNA expression, function, and variation during Drosophila embryogenesis.

Schor IE, Bussotti G, Maleš M, Forneris M, Viales RR, Enright AJ, Furlong EEM

Current biology : CB, 2018

doi:10.1016/j.cub.2018.09.026.

The Insulator Protein CTCF Is Required for Correct Hox Gene Expression, but Not for Embryonic Development in Drosophila.

Gambetta MC, Furlong EEM

Genetics, 2018

doi:10.1534/genetics.118.301350.

Developmental enhancers and chromosome topology.

Furlong EEM, Levine M

Science (New York, N.Y.), 2018

doi:10.1126/science.aau0320.

A versatile, low-cost, multiway microfluidic sorter for droplets, cells, and embryos.

Utharala R, Tseng Q, Furlong EEM, Merten CA

Analytical chemistry, 2018

doi:10.1021/acs.analchem.7b04689.

The cis-regulatory dynamics of embryonic development at single-cell resolution.

Cusanovich DA, Reddington JP, Garfield DA, Daza RM, Aghamirzaie D, Marco-Ferreres R, Pliner HA, Christiansen L, Qiu X, Steemers FJ, Trapnell C, Shendure J, Furlong EEM

Nature, 2018

doi:10.1038/nature25981.

A proteolytic fragment of histone deacetylase 4 protects the heart from failure by regulating the hexosamine biosynthetic pathway.

Lehmann LH, Jebessa ZH, Kreusser MM, Horsch A, He T, Kronlage M, Dewenter M, Sramek V, Oehl U, Krebs-Haupenthal J, von der Lieth AH, Schmidt A, Sun Q, Ritterhoff J, Finke D, Völkers M, Jungmann A, Sauer SW, Thiel C, Nickel A, Kohlhaas M, Schäfer M, Sticht C, Maack C, Gretz N, Wagner M, El-Armouche A, Maier LS, Londoño JEC, Meder B, Freichel M, Gröne HJ, Most P, Müller OJ, Herzig S, Furlong EEM, Katus HA, Backs J

Nature medicine, 2017

doi:10.1038/nm.4452.

The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription.

Mikhaylichenko O, Bondarenko V, Harnett D, Schor IE, Males M, Viales RR, Furlong EEM

Genes & development, 2018

doi:10.1101/gad.308619.117.

Opbp is a new architectural/insulator protein required for ribosomal gene expression.

Zolotarev N, Maksimenko O, Kyrchanova O, Sokolinskaya E, Osadchiy I, Girardot C, Bonchuk A, Ciglar L, Furlong EEM, Georgiev P

Nucleic acids research, 2017

doi:10.1093/nar/gkx840.

Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity.

Khoueiry P, Girardot C, Ciglar L, Peng PC, Gustafson EH, Sinha S, Furlong EE

eLife, 2017

doi:10.7554/eLife.28440.

Chromosome topology guides the Drosophila Dosage Compensation Complex for target gene activation.

Schauer T, Ghavi-Helm Y, Sexton T, Albig C, Regnard C, Cavalli G, Furlong EE, Becker PB

EMBO reports, 2017

doi:10.15252/embr.201744292.

Dynamix: Dynamic visualization by automatic selection of informative tracks from hundreds of genomic data sets.

Monfort M, Furlong EE, Girardot C

Bioinformatics (Oxford, England), 2017

doi:10.1093/bioinformatics/btx141.

Correlation Does Not Imply Causation: Histone Methyltransferases, but Not Histone Methylation, SET the Stage for Enhancer Activation

Pollex T, Furlong EEM

Molecular cell, 2017

doi:10.1016/j.molcel.2017.05.005.

Promoter shape varies across populations and affects promoter evolution and expression noise.

Schor IE, Degner JF, Harnett D, Cannavò E, Casale FP, Shim H, Garfield DA, Birney E, Stephens M, Stegle O, Furlong EE

Nature genetics, 2017

doi:10.1038/ng.3791.

Dual functionality of cis-regulatory elements as developmental enhancers and Polycomb response elements.

Erceg J, Pakozdi T, Marco-Ferreres R, Ghavi-Helm Y, Girardot C, Bracken AP, Furlong EE

Genes & development, 2017

doi:10.1101/gad.292870.116.

Genetic variants regulating expression levels and isoform diversity during embryogenesis.

Cannavò E, Koelling N, Harnett D, Garfield D, Casale FP, Ciglar L, Gustafson HE, Viales RR, Marco-Ferreres R, Degner JF, Zhao B, Stegle O, Birney E, Furlong EE

Nature, 2016

doi:10.1038/nature20802.

Identification and in silico modeling of enhancers reveals new features of the cardiac differentiation network.

Seyres D, Ghavi-Helm Y, Junion G, Taghli-Lamallem O, Guichard C, Röder L, Girardot C, Furlong EE, Perrin L

Development (Cambridge, England), 2016

doi:10.1242/dev.140822.

Chromatin Immunoprecipitation for Analyzing Transcription Factor Binding and Histone Modifications in Drosophila.

Ghavi-Helm Y, Zhao B, Furlong EE

Methods in molecular biology (Clifton, N.J.), 2016

doi:10.1007/978-1-4939-6371-3_16.

Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers.

Girardot C, Scholtalbers J, Sauer S, Su SY, Furlong EE

BMC bioinformatics, 2016

doi:10.1186/s12859-016-1284-2.

Corrigendum: Enhancer loops appear stable during development and are associated with paused polymerase

Ghavi-Helm Y, Klein FA, Pakozdi T, Ciglar L, Noordermeer D, Huber W, Furlong EEM

NATURE, 2016

doi:10.1038/nature18962.

Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes.

Mbodj A, Gustafson EH, Ciglar L, Junion G, Gonzalez A, Girardot C, Perrin L, Furlong EE, Thieffry D

PLoS computational biology, 2016

doi:10.1371/journal.pcbi.1005073.

Next-generation sequencing-based detection of germline L1-mediated transductions.

Tica J, Lee E, Untergasser A, Meiers S, Garfield DA, Gokcumen O, Furlong EE, Park PJ, Stütz AM, Korbel JO

BMC genomics, 2016

doi:10.1186/s12864-016-2670-x.

Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks.

Cannavò E, Khoueiry P, Garfield DA, Geeleher P, Zichner T, Gustafson EH, Ciglar L, Korbel JO, Furlong EE

Current biology : CB, 2015

doi:10.1016/j.cub.2015.11.034.

FourCSeq: Analysis of 4C sequencing data.

Klein FA, Pakozdi T, Anders S, Ghavi-Helm Y, Furlong EE, Huber W

Bioinformatics (Oxford, England), 2015

doi:10.1093/bioinformatics/btv335.

Conservation of transcription factor binding specificities across 600 million years of bilateria evolution.

Nitta KR, Jolma A, Yin Y, Morgunova E, Kivioja T, Akhtar J, Hens K, Toivonen J, Deplancke B, Furlong EE, Taipale J

eLife, 2015

doi:10.7554/elife.04837.

Ultrasensitive proteome analysis using paramagnetic bead technology.

Hughes CS, Foehr S, Garfield DA, Furlong EE, Steinmetz LM, Krijgsveld J

Molecular systems biology, 2014

doi:10.15252/msb.20145625.

Enhancer loops appear stable during development and are associated with paused polymerase

Ghavi-Helm Y, Klein FA, Pakozdi T, Ciglar L, Noordermeer D, Huber W, Furlong EE

Nature, 2014

doi:10.1038/nature13417.

Coordinated repression and activation of two transcriptional programs stabilizes cell fate during myogenesis

Ciglar L, Girardot C, Wilczyński B, Braun M, Furlong EE

Development (Cambridge, England), 2014

doi:10.1242/dev.101956.

A conserved role for Snail as a potentiator of active transcription

Rembold M, Ciglar L, Yáñez-Cuna JO, Zinzen RP, Girardot C, Jain A, Welte MA, Stark A, Leptin M, Furlong EE

Genes & development, 2014

doi:10.1101/gad.230953.113.

Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity

Erceg J, Saunders TE, Girardot C, Devos DP, Hufnagel L, Furlong EE

PLoS genetics, 2014

doi:10.1371/journal.pgen.1004060.

Logical modelling of Drosophila signalling pathways

Mbodj A, Junion G, Brun C, Furlong EE, Thieffry D

Molecular bioSystems, 2013

doi:10.1039/c3mb70187e.

Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing

Zichner T, Garfield DA, Rausch T, Stütz AM, Cannavó E, Braun M, Furlong EE, Korbel JO

Genome research, 2013

doi:10.1101/gr.142646.112.

Fragmentation of DNA in a sub-microliter microfluidic sonication device

Tseng Q, Lomonosov AM, Furlong EE, Merten CA

Lab on a chip, 2012

doi:10.1039/c2lc40595d.

easyRNASeq: a bioconductor package for processing RNA-Seq data

Delhomme N, Padioleau I, Furlong EE, Steinmetz LM

Bioinformatics (Oxford, England), 2012

doi:10.1093/bioinformatics/bts477.

Transcription factors: from enhancer binding to developmental control

Spitz F, Furlong EE

Nature reviews. Genetics, 2012

doi:10.1038/nrg3207.

Cell type-specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP

Bonn S, Zinzen RP, Perez-Gonzalez A, Riddell A, Gavin AC, Furlong EE

Nature protocols, 2012

doi:10.1038/nprot.2012.049.

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development

Bonn S, Zinzen RP, Girardot C, Gustafson EH, Perez-Gonzalez A, Delhomme N, Ghavi-Helm Y, Wilczyński B, Riddell A, Furlong EE

Nature genetics, 2012

doi:10.1038/ng.1064.

A transcription factor collective defines cardiac cell fate and reflects lineage history

Junion G, Spivakov M, Girardot C, Braun M, Gustafson EH, Birney E, Furlong EE

Cell, 2012

doi:10.1016/j.cell.2012.01.030.

Analyzing transcription factor occupancy during embryo development using ChIP-seq

Ghavi-Helm Y, Furlong EE

Methods in molecular biology (Clifton, N.J.), 2012

doi:10.1007/978-1-61779-292-2_14.

Analysis of variation at transcription factor binding sites in Drosophila and humans

Spivakov M, Akhtar J, Kheradpour P, Beal K, Girardot C, Koscielny G, Herrero J, Kellis M, Furlong EE, Birney E

Genome biology, 2012

doi:10.1186/gb-2012-13-9-r49.

Predicting spatial and temporal gene expression using an integrative model of transcription factor occupancy and chromatin state

Wilczynski B, Liu YH, Yeo ZX, Furlong EE

PLoS computational biology, 2012

doi:10.1371/journal.pcbi.1002798.

Molecular biology: A fly in the face of genomics

Furlong EE

Nature, 2011

doi:10.1038/471458a.

The importance of being specified: cell fate decisions and their role in cell biology

Furlong EE

Molecular biology of the cell, 2010

doi:10.1091/mbc.e10-05-0436.

Combinatorial binding leads to diverse regulatory responses: Lmd is a tissue-specific modulator of Mef2 activity

Cunha PM, Sandmann T, Gustafson EH, Ciglar L, Eichenlaub MP, Furlong EE

PLoS genetics, 2010

doi:10.1371/journal.pgen.1001014.

Dynamic CRM occupancy reflects a temporal map of developmental progression

Wilczyński B, Furlong EE

Molecular systems biology, 2010

doi:10.1038/msb.2010.35.

Model-based method for transcription factor target identification with limited data

Honkela A, Girardot C, Gustafson EH, Liu YH, Furlong EE, Lawrence ND, Rattray M

Proceedings of the National Academy of Sciences of the United States of America, 2010

doi:10.1073/pnas.0914285107.

Challenges for modeling global gene regulatory networks during development: insights from Drosophila

Wilczynski B, Furlong EE

Developmental biology, 2010

doi:10.1016/j.ydbio.2009.10.032.

Conservation and divergence in developmental networks: a view from Drosophila myogenesis

Ciglar L, Furlong EE

Current opinion in cell biology, 2009

doi:10.1016/j.ceb.2009.10.001.

Combinatorial binding predicts spatio-temporal cis-regulatory activity

Zinzen RP, Girardot C, Gagneur J, Braun M, Furlong EE

Nature, 2009

doi:10.1038/nature08531.

A systematic analysis of Tinman function reveals Eya and JAK-STAT signaling as essential regulators of muscle development

Liu YH, Jakobsen JS, Valentin G, Amarantos I, Gilmour DT, Furlong EE

Developmental cell, 2009

doi:10.1016/j.devcel.2009.01.006.

cis-Regulatory networks during development: a view of Drosophila

Bonn S, Furlong EE

Current opinion in genetics & development, 2008

doi:10.1016/j.gde.2008.09.005.

Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila

Oktaba K, Gutiérrez L, Gagneur J, Girardot C, Sengupta AK, Furlong EE, Müller J

Developmental cell, 2008

doi:10.1016/j.devcel.2008.10.005.

A topographical map of spatiotemporal patterns of gene expression

Furlong EE

Developmental cell, 2008

doi:10.1016/j.devcel.2008.04.007.

4DXpress: a database for cross-species expression pattern comparisons

Haudry Y, Berube H, Letunic I, Weeber PD, Gagneur J, Girardot C, Kapushesky M, Arendt D, Bork P, Brazma A, Furlong EE, Wittbrodt J, Henrich T

Nucleic acids research, 2008

doi:10.1093/nar/gkm797.

Enhanced function annotations for Drosophila serine proteases: a case study for systematic annotation of multi-member gene families

Shah PK, Tripathi LP, Jensen LJ, Gahnim M, Mason C, Furlong EE, Rodrigues V, White KP, Bork P, Sowdhamini R

Gene, 2008

doi:10.1016/j.gene.2007.10.012.

Divergence in cis-regulatory networks: taking the 'species' out of cross-species analysis

Zinzen RP, Furlong EE

Genome biology, 2008

doi:10.1186/gb-2008-9-11-240.

Temporal ChIP-on-chip reveals Biniou as a universal regulator of the visceral muscle transcriptional network

Jakobsen JS, Braun M, Astorga J, Gustafson EH, Sandmann T, Karzynski M, Carlsson P, Furlong EE

Genes & development, 2007

doi:10.1101/gad.437607.

CoCo: a web application to display, store and curate ChIP-on-chip data integrated with diverse types of gene expression data

Girardot C, Sklyar O, Grosz S, Huber W, Furlong EE

Bioinformatics (Oxford, England), 2007

doi:10.1093/bioinformatics/btl641.

A core transcriptional network for early mesoderm development in Drosophila melanogaster

Sandmann T, Girardot C, Brehme M, Tongprasit W, Stolc V, Furlong EE

Genes & development, 2007

doi:10.1101/gad.1509007.

Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis

Hooper SD, Boué S, Krause R, Jensen LJ, Mason CE, Ghanim M, White KP, Furlong EE, Bork P

Molecular systems biology, 2007

doi:10.1038/msb4100112.

Mes2, a MADF-containing transcription factor essential for Drosophila development

Zimmermann G, Furlong EE, Suyama K, Scott MP

Developmental dynamics : an official publication of the American Association of Anatomists, 2006

doi:10.1002/dvdy.20970.

Genomics and development: Taking developmental biology to new heights

Spitz F, Furlong EE

Developmental cell, 2006

doi:10.1016/j.devcel.2006.09.013.

A temporal map of transcription factor activity: mef2 directly regulates target genes at all stages of muscle development

Sandmann T, Jensen LJ, Jakobsen JS, Karzynski MM, Eichenlaub MP, Bork P, Furlong EE

Developmental cell, 2006

doi:10.1016/j.devcel.2006.04.009.

Developmental control of nuclear size and shape by Kugelkern and Kurzkern

Brandt A, Papagiannouli F, Wagner N, Wilsch-Bräuninger M, Braun M, Furlong EE, Loserth S, Wenzl C, Pilot F, Vogt N, Lecuit T, Krohne G, Grosshans J

Current biology : CB, 2006

doi:10.1016/j.cub.2006.01.051.

Whole Genome Approaches to Studying Drosophila Muscle Development.

Furlong EE

2006

doi:10.1007/0-387-32963-3_13.

ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos

Sandmann T, Jakobsen JS, Furlong EE

Nature protocols, 2006

doi:10.1038/nprot.2006.383.

A functional genomics approach to identify new regulators of Wnt signaling

Furlong EE

Developmental cell, 2005

doi:10.1016/j.devcel.2005.04.006.

Myofilin, a protein in the thick filaments of insect muscle

Qiu F, Brendel S, Cunha PM, Astola N, Song B, Furlong EE, Leonard KR, Bullard B

Journal of cell science, 2005

doi:10.1242/jcs.02281.

Integrating transcriptional and signalling networks during muscle development

Furlong EE

Current opinion in genetics & development, 2004

doi:10.1016/j.gde.2004.06.011.

Creation of a minimal tiling path of genomic clones for Drosophila: provision of a common resource

Hollich V, Johnson E, Furlong EE, Beckmann B, Carlson J, Celniker SE, Hoheisel JD

BioTechniques, 2004

doi:10.2144/3702A0282.

Notch and Ras signaling pathway effector genes expressed in fusion competent and founder cells during Drosophila myogenesis

Artero R, Furlong EE, Beckett K, Scott MP, Baylies M

Development (Cambridge, England), 2003

doi:10.1242/dev.00843.

Gene expression during the life cycle of Drosophila melanogaster

Arbeitman MN, Furlong EE, Imam F, Johnson E, Null BH, Baker BS, Krasnow MA, Scott MP, Davis RW, White KP

Science (New York, N.Y.), 2002

doi:10.1126/science.1072152.

Patterns of gene expression during Drosophila mesoderm development

Furlong EE, Andersen EC, Null B, White KP, Scott MP

Science (New York, N.Y.), 2001

doi:10.1126/science.1062660.

Automated sorting of live transgenic embryos

Furlong EE, Profitt D, Scott MP

Nature biotechnology, 2001

doi:10.1038/84422.

Expression of a 74-kDa nuclear factor 1 (NF1) protein is induced in mouse mammary gland involution. Involution-enhanced occupation of a twin NF1 binding element in the testosterone-repressed prostate message-2/clusterin promoter

Furlong EE, Keon NK, Thornton FD, Rein T, Martin F

The Journal of biological chemistry, 1996

doi:10.1074/jbc.271.47.29688.

YY1 and NF1 both activate the human p53 promoter by alternatively binding to a composite element, and YY1 and E1A cooperate to amplify p53 promoter activity

Furlong EE, Rein T, Martin F

Molecular and cellular biology, 1996

doi:.