![A cup of yerba mate on a wooden surface and some dried yerba mate next to it.](https://www.embl.org/news/wp-content/uploads/2025/01/yerba-mate-visual-300x180.jpg)
Spotlight: Colours of the colon
Mucus present in the mouse colon can be visualised using Alcian blue staining, as imaged here by EMBL predoctoral fellow Linda Decker.
![Cross sections of mouse colon, with mucus stained in blue and nuclei stained in red. The right section has been treated with a mucolytic agent.](https://www.embl.org/news/wp-content/uploads/2023/01/Colours_Colon_Linda.png)
Have you recently suffered from a runny nose – whether due to a seasonal allergy or a bout of the flu? Mucus – more colloquially known as snot – is a slimy, watery solution that specialised glands in various parts of our body produce. While mucus may feel like a nuisance that has one always running for a tissue, it actually contains multiple antimicrobial substances and often acts as a layer of protection against pathogens.
In addition to the respiratory system, our digestive tracts also produce mucus, where it acts as a lubricant, helping food pass through easily and preventing inflammation. In these images taken by Linda Decker, a predoctoral fellow in the Diz-Muñoz Group at EMBL Heidelberg, we can see the mucus layer in the gut stained using Alcian blue, a dye first patented in 1947 as a textile dye and later used by biologists to visualise mucus.
The image shows two cross-sections of the mouse colon, with mucus stained in blue and cell nuclei shown in red. The section on the right has been treated with a mucolytic agent – a chemical that dissolves mucus – bringing down the intensity of the blue staining. In the second image, we can also identify small chambers in the colon, called ‘crypts’, where mucus is produced and secreted.