25 April 2025, 13:00
To be announced
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Speaker(s): Roy Beck- Barkai, University of Tel Aviv, Israel
Host: Meytal Landau
Place: Seminar Room 48e
Hamburg Speaker
EMBL Hamburg
At EMBL, experts from institutes throughout the world speak on a wide range of scientific and technical topics
25 April 2025, 13:00
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Speaker(s): Roy Beck- Barkai, University of Tel Aviv, Israel
Host: Meytal Landau
Place: Seminar Room 48e
Hamburg Speaker
EMBL Hamburg
28 April 2025, 14:00
AbstractComplex networks of transcription factors TFs allow bacteria to adapt to their environment through i the sensing of molecular signals and ii corresponding gene expression responses Despite decades of work our current knowledge covers on average less than 10 of TFs regulatory functions and sensed signals in well studied bacterial species which falls below 1 in most other species... AbstractComplex networks of transcription factors (TFs) allow bacteria to adapt to their environment through (i) the sensing of molecular signals, and (ii) corresponding gene expression responses. Despite decades of work, our current knowledge covers on average less than 10% of TFs regulatory functions and sensed signals in well-studied bacterial species, which falls below 1% in most other species. To address this lack of knowledge, we develop sequencing-based approaches to accelerate the mapping of transcriptional regulatory networks, with recent proof-of-concepts applications on Escherichia coli. As a main tool, we rely on high-throughput protein expression and in vitro DNA-binding assays to identify and characterize TFs interactions with signal molecules and with DNA in a genome-wide manner for up to hundreds of TFs at a time. This work paves the way towards routine...
Speaker(s): Julian Trouillon, ETH Zürich, Switzerland
Host: Nassos Typas
Place: Small Operon
External Faculty Speaker
EMBL Heidelberg, Virtual
Abstract
Complex networks of transcription factors (TFs) allow bacteria to adapt to their environment through (i) the sensing of molecular signals, and (ii) corresponding gene expression responses. Despite decades of work, our current knowledge covers on average less than 10% of TFs regulatory functions and sensed signals in well-studied bacterial species, which falls below 1% in most other species. To address this lack of knowledge, we develop sequencing-based approaches to accelerate the mapping of transcriptional regulatory networks, with recent proof-of-concepts applications on Escherichia coli. As a main tool, we rely on high-throughput protein expression and in vitro DNA-binding assays to identify and characterize TFs interactions with signal molecules and with DNA in a genome-wide manner for up to hundreds of TFs at a time. This work paves the way towards routine near-complete mapping of transcriptional regulatory networks in bacteria.
Connection details
Zoom*: https://embl-org.zoom.us/j/97121685267?pwd=bJilqT0QoXIinBFFqW7reaOwaMDcrR.1
Meeting ID: 971 2168 5267
Passcode: 354388
Please note that the talk will yes/not be recorded.
*For the FAQ section, as a zoom participant, please use either the chat function (the host will read out your question) or the “raise your hand” function and turn on your microphone.
29 April 2025, 14:30
AbstractThe use of genomics in the surveillance of infectious disease has been hindered by the reliance on single genome assemblies which only provide a partial view of the microbial population within a sample and usually requires enrichment steps such as isolating individual bacterial colonies or amplicon sequencing Metagenomics offers an attractive alternative enabling the simultaneous... AbstractThe use of genomics in the surveillance of infectious disease has been hindered by the reliance on single genome assemblies, which only provide a partial view of the microbial population within a sample and usually requires enrichment steps such as isolating individual bacterial colonies or amplicon sequencing. Metagenomics offers an attractive alternative, enabling the simultaneous consideration of multiple strains and species in a single analysis. Despite its benefits, the computational tools available for tracking transmission using metagenomic data are challenging to use or lack the necessary resolution to accurately differentiate between recently transmitted and distantly related strains. To address this issue, we developed TRACS, an accurate and easy-to-use algorithm for establishing if two samples are plausibly related by a recent transmission event. We...
Speaker(s): Gerry Tonkin-Hill, Peter MacCallum Cancer Centre
Department of Microbiology and Immunology, The University of Melbourne, at the Peter Doherty Institute for Infection and Immunity, Australia
Host: Michael Kuhn
Place: Small Operon
External Faculty Speaker
EMBL Heidelberg, Virtual
Abstract
The use of genomics in the surveillance of infectious disease has been hindered by the reliance on single genome assemblies, which only provide a partial view of the microbial population within a sample and usually requires enrichment steps such as isolating individual bacterial colonies or amplicon sequencing.
Metagenomics offers an attractive alternative, enabling the simultaneous consideration of multiple strains and species in a single analysis. Despite its benefits, the computational tools available for tracking transmission using metagenomic data are challenging to use or lack the necessary resolution to accurately differentiate between recently transmitted and distantly related strains.
To address this issue, we developed TRACS, an accurate and easy-to-use algorithm for establishing if two samples are plausibly related by a recent transmission event. We illustrate the utility of TRACS by inferring transmission networks in patients colonised with multiple strains of the same species, utilising diverse datasets such as deep population sequencing data of Streptococcus pneumoniae, and single-cell whole genome sequencing data from patients infected with the malaria parasite Plasmodium falciparum.
Analysis of gut metagenomic samples from a large cohort of 176 mothers and 1,288 infants born in UK hospitals revealed species-specific transmission rates between mothers and their infants. Notably, we identified an increased persistence of Bifidobacterium breve in infants, a finding missed by previous analyses due to the presence of multiple strains.
Our findings highlight the limitations of using representative genomes to track microbial transmission and persistence in public health, and advocate for the use of metagenomics as a more robust and sensitive alternative.
Connection details
Zoom*:https://embl-org.zoom.us/j/97568860001?pwd=aPzMMyMASuAlRvPUiQta7eVNEpoqMq.1
Meeting ID: 975 6886 0001
Passcode: 416699
Please note that the talk will not be recorded.
*For the FAQ section, as a zoom participant, please use either the chat function (the host will read out your question) or the “raise your hand” function and turn on your microphone.
6 May 2025, 10:00
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Speaker(s): Daniel Ghete, Tomocube, USA
Host: Beate Neumann, ALMF
Place: Room 13-518 a + b
Company Representative
EMBL Heidelberg
9 May 2025, 13:00
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Speaker(s): Doeke Hekstra, Harvard University, USA, USA
Host: David von Stetten ( Scheider Group)
Place: Seminar Room 48e
Hamburg Speaker
EMBL Hamburg
15 May 2025, 14:30
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Speaker(s): Michel Milinkovitch, University of Geneva, Switzerland
Host: Aissam Ikmi
Place: Large Operon
External Faculty Speaker
EMBL Heidelberg
22 May 2025, 11:00
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Speaker(s): Euan Monaghan, Book designer and publisher (former scientist investigating Mars habitability), Netherlands | Matthias Stahl, Head Data and Visualizations at Der Spiegel (former scientist in biochemistry and proteomics research), Germany
Host: EMBL Fellows' Career Service
Place: Virtual seminar (Join the VC)
Career Event
EMBL Heidelberg
13 June 2025, 13:00
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Speaker(s): Roland Riek, ETH Zurich
Department of Chemistry and Applied Biosciences, Switzerland
Host: Meytal Landau
Place: Seminar Room 48e
Hamburg Speaker
EMBL Hamburg
16 June 2025, 12:10
We live in an era of unprecedented scientific breakthroughs gene editing stem cell research AI driven discoveries and rapid vaccine development are revolutionizing our world Yet alongside these advancements misinformation ethical dilemmas and scientific scepticism have become more prominent raising crucial questions about trust in science How do we navigate a post truth society where... We live in an era of unprecedented scientific breakthroughs – gene editing, stem cell research, AI-driven discoveries, and rapid vaccine development are revolutionizing our world. Yet, alongside these advancements, misinformation, ethical dilemmas, and scientific scepticism have become more prominent, raising crucial questions about trust in science.How do we navigate a "post-truth" society where scientific credibility is constantly challenged? How can researchers, policymakers, and science communicators strengthen the bond between science and society?The 2025 Science & Society Conference "In Science We Trust?" is your opportunity to tackle these pressing issues head-on. Over two thought-provoking days, we’ll examine how public perception of science has evolved, explore the societal impact of trust in research, and discuss the role of scientists in fostering transparency and...
Speaker(s): Ralf Bartenschlager, Heidelberg University Hospital, Germany | Maura Hiney, University College Dublin, Ireland | Ulrike Beisiegel, University of Göttingen, Germany | Ben Bleasdale, Campaign for Science and Engineering, UK | Perihan Elif Ekmekci, TOBB University of Economics and Technology, Turkey | Caitjan Gainty, King’s College London, UK | Margaret Gold, Leiden University, The Netherlands | Giorgia Guglielmi, Freelance Science Journalist, Switzerland | Andreas Kosmider, Falling Walls Foundation, Germany | Resham Kotecha, Open Data Institute, UK | Mihalis Kritikos, European Parliament, Belgium | Rebecca Lawrence, F1000, UK | Marcus Munafo, University of Bristol, UK | Henriikka Mustajoki, Open Science, Finland | Malvika Sharan, The Alan Turing Institute, UK | Veli Vural Uslu, TAP (The Awesome Potatoes) Science Theater, Heidelberg | Victoria Tianjing Yan, EMBL Heidelberg, Germany | Hub Zwart, Erasmus School of Philosophy, The Netherlands
Host: Bioethics Services Office
Place: ATC Auditorium (Join the VC)
Science and Society
EMBL Heidelberg
We live in an era of unprecedented scientific breakthroughs – gene editing, stem cell research, AI-driven discoveries, and rapid vaccine development are revolutionizing our world. Yet, alongside these advancements, misinformation, ethical dilemmas, and scientific scepticism have become more prominent, raising crucial questions about trust in science.
How do we navigate a "post-truth" society where scientific credibility is constantly challenged? How can researchers, policymakers, and science communicators strengthen the bond between science and society?
The 2025 Science & Society Conference "In Science We Trust?" is your opportunity to tackle these pressing issues head-on. Over two thought-provoking days, we’ll examine how public perception of science has evolved, explore the societal impact of trust in research, and discuss the role of scientists in fostering transparency and engagement. Through inspiring keynote speeches, lively panel discussions, and poster sessions, you’ll gain insights from leading experts and discuss together about the future of trust in science.
The conference welcomes not only life science researchers and students, but also professionals from different fields who are dedicated to fostering a trustworthy relationship between science and society. Whether you are a science communicator, educator, policy-maker, ombudsman or ethicist, this event is sure to be of interest to you!
14 July 2025, 11:00
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Speaker(s): Anshul Kundaje, Stanford University, USA
Place: Conf Room/Building 14
EMBL Distinguished Visitor Lecture
EMBL Rome
25 July 2025, 11:00
AbstractDrastic epigenetic reprogramming occurs during mammalian early embryogenesis Deciphering the molecular events underlying these processes is crucial for understanding how epigenetic information is transmitted between generations and how life really begins Probing these questions was previously hindered by the scarce experimental materials that are available in early development By... AbstractDrastic epigenetic reprogramming occurs during mammalian early embryogenesis. Deciphering the molecular events underlying these processes is crucial for understanding how epigenetic information is transmitted between generations and how life really begins. Probing these questions was previously hindered by the scarce experimental materials that are available in early development. By developing a set of ultra-sensitive chromatin analysis technologies, we investigated chromatin reprogramming during early mouse development for chromatin accessibility, histone modifications, and 3D architecture. These studies unveiled highly dynamic and non-canonical chromatin regulation during maternal-to-zygotic transition and zygotic genome activation (ZGA). However, how ZGA is kickstarted and how the early development program is progressively driven by transcription factors (TFs) remain...
Speaker(s): Wei Xie, School of Life Sciences, Tsinghua University,, China
Host: Ana Boskovic
Place: Conf Room/Building 14
EMBL Distinguished Visitor Lecture
EMBL Rome
Abstract
Drastic epigenetic reprogramming occurs during mammalian early embryogenesis. Deciphering the molecular events underlying these processes is crucial for understanding how epigenetic information is transmitted between generations and how life really begins. Probing these questions was previously hindered by the scarce experimental materials that are available in early development. By developing a set of ultra-sensitive chromatin analysis technologies, we investigated chromatin reprogramming during early mouse development for chromatin accessibility, histone modifications, and 3D architecture. These studies unveiled highly dynamic and non-canonical chromatin regulation during maternal-to-zygotic transition and zygotic genome activation (ZGA). However, how ZGA is kickstarted and how the early development program is progressively driven by transcription factors (TFs) remain enigmatic. Recently, we identified key TFs that act at the onset of ZGA, and those that connect ZGA to the first cell fate commitment. In this talk, I will discuss how TFs and epigenetic factors cooperatively establish embryonic program and restore the embryonic epigenomes when the life begins.
3 October 2025, 11:00
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Speaker(s): Cyril Henry, University of Bordeaux, France
Host: Cornelius Gross
Place: Conf Room/Building 14
External Faculty Speaker
EMBL Rome
7 October 2025, 11:00
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Speaker(s): Magdalena Götz, Helmholtz Zentrum München, Germany
Place: Conf Room/Building 14
EMBL Distinguished Visitor Lecture
EMBL Rome
17 October 2025, 11:00
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Speaker(s): Antonella Riccio, UCL Laboratory for Molecular Cell Biology, United Kingdom
Place: Sapienza Università di Roma - Aula Odeion - Museo dell'Arte Classica - P.le Aldo Moro, 5 - Roma
EMBL - Sapienza Lecture
EMBL Rome
24 October 2025, 11:00
AbstractMemory formation relies on a bidirectional interplay between synaptic plasticity and nucleus templated transcriptional programs but how precisely this interplay is orchestrated by epigenetic mechanisms remains to a large extent unknown In this talk I will showcase our recent efforts to better understand this aspect from two angles First we have found that chromatin plasticity in the... AbstractMemory formation relies on a bidirectional interplay between synaptic plasticity and nucleus-templated transcriptional programs, but how precisely this interplay is orchestrated by epigenetic mechanisms remains to a large extent unknown. In this talk, I will showcase our recent efforts to better understand this aspect from two angles. First, we have found that chromatin plasticity in the mouse brain is a key determinant for memory allocation, the process by which neurons become recruited into the memory trace: When we increased chromatin plasticity by enzymatic overexpression of histone acetyl transferases (HATs), neurons with elevated histone acetylation were preferentially recruited into the encoding ensemble and memory retention was enhanced, while optogenetic silencing of the epigenetically altered neurons prevented memory expression. Second, we have found that after...
Speaker(s): Johannes Graff, École Polytechnique Fédérale de Lausanne (EPFL), Switzerland
Place: Conf Room/Building 14
External Faculty Speaker
EMBL Rome
Abstract
Memory formation relies on a bidirectional interplay between synaptic plasticity and nucleus-templated transcriptional programs, but how precisely this interplay is orchestrated by epigenetic mechanisms remains to a large extent unknown. In this talk, I will showcase our recent efforts to better understand this aspect from two angles. First, we have found that chromatin plasticity in the mouse brain is a key determinant for memory allocation, the process by which neurons become recruited into the memory trace: When we increased chromatin plasticity by enzymatic overexpression of histone acetyl transferases (HATs), neurons with elevated histone acetylation were preferentially recruited into the encoding ensemble and memory retention was enhanced, while optogenetic silencing of the epigenetically altered neurons prevented memory expression. Second, we have found that after learning, the epigenetic make-up of a single locus in the encoding ensemble is necessary and sufficient to bidirectionally alter memory performance across different phases of memory consolidation. Together, these findings stipulate that before and after memory encoding, epigenetic mechanisms play a pivotal role as molecular memory aids.
7 November 2025, 11:00
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Speaker(s): Stavros Lomvardas, Columbia University, USA
Place: Conf Room/Building 14
EMBL Distinguished Visitor Lecture
EMBL Rome
14 November 2025, 11:00
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Speaker(s): Andrea Ganna, Institute for Molecular Medicine Finland (FIMM), Finland
Place: Sapienza Università di Roma - Aula Odeion - Museo dell'Arte Classica - P.le Aldo Moro, 5 - Roma
EMBL - Sapienza Lecture
EMBL Rome
21 November 2025, 11:00
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Speaker(s): Hongkui Zeng, Allen Institute for Brain Science, USA
Place: Conf Room/Building 14
EMBL Distinguished Visitor Lecture
EMBL Rome
4 December 2025, 14:30
Abstract Text for abstract About the speaker Biographical information about the speaker Meet the speakerTo meet with the speaker informally after the talks sign up here add link We especially encourage predocs and postdocs to take advantage of this opportunity Attachments Link to a file for example a pdf of the seminar s programme the file can be uploaded on the intranet Connection... Abstract[Text for abstract].About the speaker[Biographical information about the speaker].Meet the speakerTo meet with the speaker informally after the talks,sign up here [add link]. We especially encourage predocs and postdocs to take advantage of this opportunity.Attachments[Link to a file (for example a pdf of the seminar’s programme) - the file can be uploaded on the intranet]Connection detailsZoom*: [https://embl-org.zoom.us/j/96374261689?pwd=TnNxRWtQY2lyc2pSa2JpY3NGcDlhZz09] (Meeting ID: [963 7426 1689], Password: [DBU])Please note that the talk will yes/not be recorded.*For the FAQ section, as a zoom participant, please use either the chat function (the host will read out your question) or the “raise your hand” function and turn on your microphone.
Speaker(s): Irene Miguel Aliaga, The Francis Crick Institute, United Kingdom
Place: Small Operon
External Faculty Speaker
EMBL Heidelberg
Abstract
[Text for abstract].
About the speaker
[Biographical information about the speaker].
Meet the speaker
To meet with the speaker informally after the talks,sign up here [add link]. We especially encourage predocs and postdocs to take advantage of this opportunity.
Attachments
[Link to a file (for example a pdf of the seminar’s programme) - the file can be uploaded on the intranet]
Connection details
Zoom*: [https://embl-org.zoom.us/j/96374261689?pwd=TnNxRWtQY2lyc2pSa2JpY3NGcDlhZz09] (Meeting ID: [963 7426 1689], Password: [DBU])
Please note that the talk will yes/not be recorded.
*For the FAQ section, as a zoom participant, please use either the chat function (the host will read out your question) or the “raise your hand” function and turn on your microphone.
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